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257
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Comment: Comment: Can I compare kallisto counts from samples with different amount of reads?
6 days ago by bioinfo ▴ 150
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254
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Comment: Comment: How to row normalize a matrixplot?
7 days ago by bioinfo ▴ 150
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2
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257
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Can I compare kallisto counts from samples with different amount of reads?
RNA-seq kallisto
6 days ago by bioinfo ▴ 150
0
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0
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144
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How should I make kallisto indexes?
kallisto
updated 7 days ago by 141k • written 7 days ago by ▴ 150
2
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2
replies
254
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How to row normalize a matrixplot?
scRNA-seq RNA-seq single-cell scanpy
7 days ago by bioinfo ▴ 150
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1
reply
192
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How to do DE between cells expressing specific gene in scanpy?
scRNA-seq single-cell scanpy
updated 18 days ago by 43k • written 18 days ago by ▴ 150
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0
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284
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
21 days ago by bioinfo ▴ 150
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1
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284
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Comment: Comment: How to compare bulk RNA seq data demultiplexed in different ways?
21 days ago by bioinfo ▴ 150
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5
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284
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How to compare bulk RNA seq data demultiplexed in different ways?
RNA-seq
updated 18 days ago by 43k • written 21 days ago by ▴ 150
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1
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473
views
Comment: Comment: How does kallisto handle multi mapped reads?
8 weeks ago by bioinfo ▴ 150
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1
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473
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Comment: Comment: How does kallisto handle multi mapped reads?
8 weeks ago by bioinfo ▴ 150
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7
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473
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How does kallisto handle multi mapped reads?
kallisto
updated 8 weeks ago by ★ 5.8k • written 8 weeks ago by ▴ 150
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2
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336
views
How to add motifs in cellranger-arc reference?
gtf scRNAseq fasta cellranger
updated 4 days ago by • 0 • written 8 weeks ago by ▴ 150
0
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0
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277
views
How to do KEGG pathway analysis when I have a gene with multiple entrez IDs?
biomart kegg deseq2
4 months ago by bioinfo ▴ 150
4
votes
2
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600
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Does DESeq2 correct for library size when importing the counts with DESeqDataSetFromMatrix?
rna-seq deseq2
updated 5 months ago by 19k • written 5 months ago by ▴ 150
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1
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954
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
5 months ago by bioinfo ▴ 150
0
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1
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954
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Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
5 months ago by bioinfo ▴ 150
0
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1
reply
954
views
Comment: Comment: How much adapters is it ok to keep in my samples after RNA seq?
5 months ago by bioinfo ▴ 150
3
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7
replies
954
views
How much adapters is it ok to keep in my samples after RNA seq?
RNA-seq illumina adapters
updated 18 days ago by 43k • written 5 months ago by ▴ 150
0
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0
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659
views
Comment: Comment: Why am I getting different results with kallisto?
5 months ago by bioinfo ▴ 150
0
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1
reply
659
views
Comment: Comment: Why am I getting different results with kallisto?
5 months ago by bioinfo ▴ 150
0
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1
reply
659
views
Comment: Comment: Why am I getting different results with kallisto?
5 months ago by bioinfo ▴ 150
3
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4
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659
views
Why am I getting different results with kallisto?
kallisto
5 months ago by bioinfo ▴ 150
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1
reply
464
views
Comment: Comment: Are truseq adapter sequences picked up by FASTQC?
5 months ago by bioinfo ▴ 150
2
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3
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464
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Are truseq adapter sequences picked up by FASTQC?
fastqc truseq
updated 5 months ago by 141k • written 5 months ago by ▴ 150
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0
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320
views
How to convert dataframe properly to anndata?
single-cell python anndata
updated 18 days ago by 43k • written 6 months ago by ▴ 150
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0
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320
views
How to import filtered_tf_bc_matrix and add it to my anndata object?
python anndata atac-seq
updated 18 days ago by 43k • written 6 months ago by ▴ 150
0
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0
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293
views
How to subsample ATAC fragment file?
single-cell atac-seq scRNA-seq
updated 18 days ago by 43k • written 6 months ago by ▴ 150
0
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0
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668
views
Comment: Comment: How to assign gene names after kallisto when I add GFP?
6 months ago by bioinfo ▴ 150
0
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1
reply
668
views
Comment: Comment: How to assign gene names after kallisto when I add GFP?
6 months ago by bioinfo ▴ 150
0
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2
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1.3k
views
Removing constant/zero columns for PCA?
R pca
updated 6 months ago by ★ 27k • written 6 months ago by ▴ 150
1
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4
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668
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How to assign gene names after kallisto when I add GFP?
tximport RNA-seq kallisto
6 months ago by bioinfo ▴ 150
0
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0
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1.8k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
6 months ago by bioinfo ▴ 150
0
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0
replies
1.8k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
6 months ago by bioinfo ▴ 150
1
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8
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1.8k
views
How to plot proportion of cells in each cluster with scanpy?
scRNA-seq scanpy single-cell
6 months ago by bioinfo ▴ 150
0
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1
reply
1.8k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
6 months ago by bioinfo ▴ 150
0
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1
reply
1.8k
views
Comment: Comment: How to plot proportion of cells in each cluster with scanpy?
6 months ago by bioinfo ▴ 150
0
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0
replies
645
views
Comment: Comment: How to calculate GC content of reads that mapped to a specific gene?
7 months ago by bioinfo ▴ 150
5
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2
replies
645
views
How to calculate GC content of reads that mapped to a specific gene?
STAR RNA-seq
7 months ago by bioinfo ▴ 150
0
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0
replies
883
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
7 months ago by bioinfo ▴ 150
0
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1
reply
883
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
7 months ago by bioinfo ▴ 150
0
votes
0
replies
883
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
7 months ago by bioinfo ▴ 150
0
votes
1
reply
883
views
Comment: Comment: Can the DESeq2 object for paired data be set with design= ~ batch + condition?
7 months ago by bioinfo ▴ 150
0
votes
8
replies
883
views
Can the DESeq2 object for paired data be set with design= ~ batch + condition?
rna-seq deseq2
7 months ago by bioinfo ▴ 150
1
vote
1
reply
562
views
Do I need to perform basic filtering before using scrublet?
scanpy scrublet
updated 8 months ago by 141k • written 8 months ago by ▴ 150
0
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0
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924
views
Comment: Comment: Questions about per base sequence quality and GC content.
8 months ago by bioinfo ▴ 150
0
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1
reply
924
views
Comment: Comment: Questions about per base sequence quality and GC content.
8 months ago by bioinfo ▴ 150
0
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0
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942
views
Comment: Comment: How to choose threshold for scrublet?
8 months ago by bioinfo ▴ 150
0
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2
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942
views
How to choose threshold for scrublet?
rna-seq scrublet
8 months ago by bioinfo ▴ 150
0
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0
replies
924
views
Comment: Comment: Questions about per base sequence quality and GC content.
8 months ago by bioinfo ▴ 150
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