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comments
0
votes
0
replies
738
views
Comment:
Comment: Does adding reads cause batch effects?
9 months ago by
bioinfo
▴ 150
0
votes
1
reply
738
views
Comment:
Comment: Does adding reads cause batch effects?
10 months ago by
bioinfo
▴ 150
4
votes
5
replies
738
views
Does adding reads cause batch effects?
kallisto
RNAseq
9 months ago by
bioinfo
▴ 150
0
votes
0
replies
465
views
Do I need to do QC before demultiplexing hashtags with hashsolo?
scanpy
hashtag
hashsolo
RNAseq
11 months ago by
bioinfo
▴ 150
1
vote
0
replies
1.3k
views
Comment:
Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
11 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.3k
views
Comment:
Comment: How to demultiplex data with totalseq B antibodies using hashsolo?
11 months ago by
bioinfo
▴ 150
1
vote
3
replies
1.3k
views
How to demultiplex data with totalseq B antibodies using hashsolo?
cellranger.
seq
hashsolo
rna
11 months ago by
bioinfo
▴ 150
0
votes
0
replies
595
views
Comment:
Comment: Do I need to specify the introns on the gtf file for cellranger?
11 months ago by
bioinfo
▴ 150
0
votes
2
replies
595
views
Do I need to specify the introns on the gtf file for cellranger?
fasta
gtf
cellranger
scRNAseq
updated 11 months ago by
GenoMax
140k • written 11 months ago by
bioinfo
▴ 150
2
votes
1
reply
584
views
Can I normalize several samples with DESeq2 and then do pairwise comparisons?
deseq2
rna-seq
updated 11 months ago by
rpolicastro
13k • written 11 months ago by
bioinfo
▴ 150
1
vote
1
reply
552
views
Do indexes made with cDNA fasta file contain only mRNAs?
ensembl
kallisto
updated 12 months ago by
dsull
★ 5.7k • written 12 months ago by
bioinfo
▴ 150
0
votes
0
replies
358
views
How to analyze SCRNA seq data labelled with LARRY?
single
lineage
RNA
tracing
LARRY
updated 13 months ago by
GenoMax
140k • written 13 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.3k
views
Comment:
Comment: How to add gene entry to gtf file?
13 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.3k
views
Comment:
Comment: How to add gene entry to gtf file?
13 months ago by
bioinfo
▴ 150
0
votes
2
replies
1.3k
views
Comment:
Comment: How to add gene entry to gtf file?
13 months ago by
bioinfo
▴ 150
2
votes
5
replies
1.3k
views
How to add gene entry to gtf file?
single-cell
cellranger
updated 13 months ago by
Ram
43k • written 13 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.1k
views
Comment:
Comment: How to interpret dotplot from enrichment analysis with gseapy?
13 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.1k
views
Comment:
Comment: How to interpret dotplot from enrichment analysis with gseapy?
13 months ago by
bioinfo
▴ 150
2
votes
5
replies
1.1k
views
Problem with tximport and plasmodium falciparum
tximport
13 months ago by
bioinfo
▴ 150
2
votes
0
replies
1.1k
views
Answer:
Answer: Problem with tximport and plasmodium falciparum
13 months ago by
bioinfo
▴ 150
1
vote
3
replies
1.9k
views
How to make a UMAP for single cell data and color cells by average expression of a list of genes in scanpy?
single-cell
scanpy
RNA-seq
UMAP
13 months ago by
bioinfo
▴ 150
1
vote
0
replies
1.9k
views
Answer:
Answer: How to make a UMAP for single cell data and color cells by average expression of
13 months ago by
bioinfo
▴ 150
0
votes
0
replies
4.4k
views
Comment:
Comment: Encountering error when loading scanpy?
13 months ago by
bioinfo
▴ 150
1
vote
5
replies
1.1k
views
How to interpret dotplot from enrichment analysis with gseapy?
gsea
single-cell
gseapy
enrichR
13 months ago by
bioinfo
▴ 150
3
votes
4
replies
765
views
How to remove a gene before making a cellranger reference?
fasta
gtf
cellranger
scRNAseq
updated 13 months ago by
ATpoint
81k • written 13 months ago by
bioinfo
▴ 150
0
votes
2
replies
765
views
Comment:
Comment: How to remove a gene before making a cellranger reference?
13 months ago by
bioinfo
▴ 150
0
votes
0
replies
469
views
Comment:
Comment: Do I need to merge files after downloading them from SRA?
13 months ago by
bioinfo
▴ 150
1
vote
2
replies
469
views
Do I need to merge files after downloading them from SRA?
rna-seq
sra
13 months ago by
bioinfo
▴ 150
14
votes
8
replies
4.4k
views
Encountering error when loading scanpy?
scanpy
single-cell
scRNA-seq
13 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.9k
views
Comment:
Comment: How to make a UMAP for single cell data and color cells by average expression of
13 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.1k
views
Comment:
Comment: Problem with tximport and plasmodium falciparum
13 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.1k
views
Comment:
Comment: Problem with tximport and plasmodium falciparum
13 months ago by
bioinfo
▴ 150
1
vote
0
replies
438
views
What is the difference between gseapy.prerank and gseapy.gsea?
gseapy
gsea
13 months ago by
bioinfo
▴ 150
3
votes
2
replies
539
views
Do I need to correct for sequencing depth in bulk RNA seq?
kallisto
RNA-seq
updated 13 months ago by
Ram
43k • written 14 months ago by
bioinfo
▴ 150
0
votes
0
replies
470
views
How to adjust graph in scanpy?
scanpy
single-cell
RNA-seq
14 months ago by
bioinfo
▴ 150
0
votes
0
replies
638
views
How to analyze scRNA seq data with time points (Seurat/Pseudotime)?
monocle3
scRNA-seq
pseudotime
Seurat
R
14 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.0k
views
Comment:
Comment: How to perform scRNA seq analysis?
14 months ago by
bioinfo
▴ 150
2
votes
2
replies
1.0k
views
How to perform scRNA seq analysis?
single-cell
pseudobulk
seurat
14 months ago by
bioinfo
▴ 150
0
votes
0
replies
1.3k
views
Comment:
Comment: Issues with chromosome file in kallisto
15 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.3k
views
Comment:
Comment: Issues with chromosome file in kallisto
15 months ago by
bioinfo
▴ 150
0
votes
0
replies
760
views
Comment:
Comment: Does the bootstrap in kallisto affect the BAM files?
15 months ago by
bioinfo
▴ 150
3
votes
2
replies
760
views
Does the bootstrap in kallisto affect the BAM files?
RNAseq
kallisto
BAM
15 months ago by
bioinfo
▴ 150
1
vote
4
replies
1.3k
views
Issues with chromosome file in kallisto
kallisto
updated 15 months ago by
dsull
★ 5.7k • written 15 months ago by
bioinfo
▴ 150
1
vote
2
replies
803
views
How to run UMAP on single cell results from 2 different runs?
single-cell
seurat
cellranger
updated 15 months ago by
LChart
3.9k • written 15 months ago by
bioinfo
▴ 150
0
votes
1
reply
699
views
Comment:
Comment: How to check gene properties (eg GC, repetitiveness, average expression level)?
16 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.2k
views
Comment:
Comment: Can I demultiplex run based on i5 sequence?
16 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.2k
views
Comment:
Comment: Can I demultiplex run based on i5 sequence?
16 months ago by
bioinfo
▴ 150
1
vote
3
replies
699
views
How to check gene properties (eg GC, repetitiveness, average expression level)?
deseq2
kallisto
RNA-seq
updated 13 months ago by
Ram
43k • written 16 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.2k
views
Comment:
Comment: Can I demultiplex run based on i5 sequence?
16 months ago by
bioinfo
▴ 150
0
votes
1
reply
1.2k
views
Comment:
Comment: Can I demultiplex run based on i5 sequence?
16 months ago by
bioinfo
▴ 150
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