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Comment: Comment: How to choose parameters for kallisto single end mode?
13 months ago by bioinfo ▴ 140
7
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3
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1.5k
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Should I merge my technical replicates for bulk RNA seq?
RNA-seq DESeq2
updated 9 months ago by 41k • written 13 months ago by ▴ 140
4
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4
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772
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Can I perform DE analysis with Seurat if I only have one sample per condition?
single RNA Seq cell seurat
updated 13 months ago by 3.5k • written 13 months ago by ▴ 140
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0
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290
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How do I get estimated gene counts for a reference that contains GFP using Kallisto?
gene ensembl tximport kallisto
14 months ago by bioinfo ▴ 140
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0
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1.1k
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Comment: Comment: How can I confirm that I installed bcl2fastq correctly?
15 months ago by bioinfo ▴ 140
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1.1k
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Comment: Comment: How can I confirm that I installed bcl2fastq correctly?
15 months ago by bioinfo ▴ 140
4
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4
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1.1k
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How can I confirm that I installed bcl2fastq correctly?
bcl2fastq linux ubuntu
15 months ago by bioinfo ▴ 140
3
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2
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540
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Why do I get a positive gene expression with qPCR for one my genes but in with when doing bulk RNA seq I get a count of 0?
gene qpcr kallisto seq expression rna
updated 16 months ago by ★ 5.1k • written 16 months ago by ▴ 140
1
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3
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647
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How to filter .fa file by gene_biotype
rna-seq kallisto
updated 17 months ago by 41k • written 18 months ago by ▴ 140
0
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1
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989
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Comment: Comment: How to create kallisto index that does not include ribosomal genes
18 months ago by bioinfo ▴ 140
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1
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989
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Comment: Comment: How to create kallisto index that does not include ribosomal genes
18 months ago by bioinfo ▴ 140
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7
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989
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6 follow
How to create kallisto index that does not include ribosomal genes
enseml kallisto RNA-seq
updated 11 months ago by 41k • written 18 months ago by ▴ 140
0
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0
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327
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Replicates in sc-RNA seq have different amount of cells-Can I still use them for the analysis?
Cell seurat Single
updated 18 months ago by 78k • written 18 months ago by ▴ 140
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2
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908
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Comment: Comment: Can I use the transcripts_to_genes.txt file from kallisto for bulk RNA seq data?
19 months ago by bioinfo ▴ 140
2
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4
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908
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Can I use the transcripts_to_genes.txt file from kallisto for bulk RNA seq data?
kallisto
updated 19 months ago by 41k • written 19 months ago by ▴ 140
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1
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902
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Comment: Comment: Ensembl version for mapping and annotating genes
19 months ago by bioinfo ▴ 140
2
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3
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902
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Ensembl version for mapping and annotating genes
rna-seq kallisto
updated 17 months ago by 41k • written 19 months ago by ▴ 140
6
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2
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498
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Ensembl version
ensembl kallisto
updated 11 months ago by 41k • written 19 months ago by ▴ 140
2
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2
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2.0k
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Cellranger command for RNA velocity
cellranger Cell velocity RNA Single
updated 22 months ago by 8.9k • written 22 months ago by ▴ 140
4
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2
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815
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Estimated gene counts with tximport
RNA-seq ensembl tximport kallisto
updated 17 months ago by 41k • written 23 months ago by ▴ 140
3
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3
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1.2k
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Will Kallisto show a decrease in the TPM value if I have knocked out 2 of the 8 exons from a gene?
RNA-seq
updated 17 months ago by 41k • written 2.0 years ago by ▴ 140
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1.1k
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Comment: Comment: How to demultiplex a single indexed library on a dual indexed flow cell?
2.0 years ago by bioinfo ▴ 140
2
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2
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1.1k
views
How to demultiplex a single indexed library on a dual indexed flow cell?
Cell Single
updated 2.0 years ago by 136k • written 2.0 years ago by ▴ 140
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