User: Flow

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Flow1.5k
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Posts by Flow

<prev • 195 results • page 2 of 20 • next >
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Is There A Web Based Tool For Fixing Pdb Protein Structures That May Have Missing Atoms?
... Some protein files from PDB database have missing atoms, so when I use them with some molecular modeling programs, they complain about it. Is it there any web server that can fix/heal them? SOmebody told me about MODELLER, but as far as I know they do not have a server. ...
protein structure written 6.7 years ago by Flow1.5k • updated 6.7 years ago by quentin.delettre430
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Answer: A: Adding New Atom To Parameter File In Autodock
... To which protein are you trying to dock the ligand to? ...
written 6.7 years ago by Flow1.5k
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Direct Comparison Between A Protein Folding Hp Lattice Model And A Real Protein Structure?
... I have been recently reading a lot about protein lattice models and how they try to predict protein structure. There are really many papers on this subject, but it seems incredible to me that I have not seen any "direct" comparison between the lattice alpha-carbon prediction of the protein structure ...
prediction protein structural written 6.7 years ago by Flow1.5k
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Download Pdb Structures Containing Only Helices
... What is the best language/approach/method to download all protein structures from PDB that only or mostly contain helices? and only beta-sheets? ...
pdb protein structure written 6.8 years ago by Flow1.5k • updated 5.5 years ago by Biostar ♦♦ 20
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Get Protein Monomers In An Automated Way
... For a given set of protein structures in pdb format from the PDB database, I would like to find some automated way for checking whether each structure is monomer, dimer, trimer, etc, so I only get for each case the unit structure or monomer. I head about biopython, but I am not sure and wonder wheth ...
python biopython structural written 6.8 years ago by Flow1.5k • updated 6.8 years ago by quentin.delettre430
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Find Papers That Use A Given Pdb Structure
... For a given protein structure, for instance 1AZX, I would like to find all papers that have used this structure.The main criteria is that they state it in the paper text, so sometimes it could happen that they even not cite the paper of the structure. Methods I tried a) Google Scholar; 1azx + pdb b ...
pdb papers protein written 6.9 years ago by Flow1.5k • updated 4.8 years ago by Biostar ♦♦ 20
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Comment: C: List Of Molecular Descriptors
... oh, then excuse me, my sir, I beg you pardon ...
written 6.9 years ago by Flow1.5k
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Comment: C: List Of Molecular Descriptors
... Yes, I agree completely. The question could be "what is the minimal number of useful descriptors". Sure there are papers about this. And also which other useful descriptors have not been used yet. ...
written 6.9 years ago by Flow1.5k
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Comment: C: Ligand Database For Compounds Present In Human Food
... This looks good but I could only find around 127 compounds ...
written 6.9 years ago by Flow1.5k
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Comment: C: Ligand Database For Compounds Present In Human Food
... I could not find any structural information in such databases ...
written 6.9 years ago by Flow1.5k

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Student 7.2 years ago, asked a question with at least 3 up-votes. For Challenges In Drug Discovery
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