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questions
4
votes
6
replies
768
views
Read group addition order in RNA-seq short variant discovery (SNPs + Indels)
rnaseq
variantcalling
addreadgroups
gatk
updated 16 days ago by
GenoMax
154k • written 16 days ago by
iamsmor
• 0
0
votes
1
reply
766
views
Does the order of SplitNCigarReads and MarkDuplicates affect RNA-seq variant calling results?
variantcalling.
rnaseq
gatk
updated 4 months ago by
rfran010
★ 1.7k • written 4 months ago by
iamsmor
• 0
1
vote
1
reply
1.3k
views
GATK BQSR error — Reference and BAM file chromosome name mismatch (“chr” vs. no “chr”)
GATK
VCF
BSQR
updated 5 months ago by
Ram
45k • written 5 months ago by
iamsmor
• 0
0
votes
2
replies
1.2k
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
bioconductor
Rpackage
clusterprofiler
14 months ago by
iamsmor
• 0
1
vote
1
reply
766
views
Pathway analysis for mouse gene sets
mouse
GAGE
pathway-analysis
gene-enrichment
updated 14 months ago by
Ming Tommy Tang
★ 4.7k • written 14 months ago by
iamsmor
• 0
0
votes
0
replies
482
views
AlphaFold3 molecular docking
alphafold3
ligand
moleculardocking
14 months ago by
iamsmor
• 0
0
votes
1
reply
776
views
Automated my docking results by using script
Receptor-ligand-interaction
DSV
VINA
updated 17 months ago by
Ram
45k • written 17 months ago by
iamsmor
• 0
12
votes
12
replies
3.5k
views
Downloaded pdb's on rcsb.org
rcsb
pdb
updated 14 months ago by
Ram
45k • written 19 months ago by
iamsmor
• 0
0
votes
2
replies
1.7k
views
autodockvina
python
python3
autodock
updated 19 months ago by
Ram
45k • written 22 months ago by
iamsmor
• 0
2
votes
3
replies
4.4k
views
autodock vina on mac
docking
mgltools
virtualbox
updated 23 months ago by
Ram
45k • written 23 months ago by
iamsmor
• 0
0
votes
0
replies
717
views
Diffdock
molecular-docking
diffdock
multi-protein
autodock-vina
updated 2.2 years ago by
Ram
45k • written 2.2 years ago by
iamsmor
• 0
0
votes
0
replies
530
views
molecular docking of thousands of proteins with a ligand
autodock-vina
blind-docking
updated 2.2 years ago by
Ram
45k • written 2.2 years ago by
iamsmor
• 0
0
votes
3
replies
1.4k
views
molecular docking for a ligand to multi protein
molecular-docking
autodock-vina
updated 2.3 years ago by
Aditya naman
• 0 • written 2.3 years ago by
iamsmor
• 0
3
votes
2
replies
2.5k
views
pymol for superimpose by python script
png
python
pymol
superimposition
updated 2.2 years ago by
Ram
45k • written 3.4 years ago by
iamsmor
• 0
2
votes
4
replies
3.3k
views
Pymol superimposition by python script
python
superimposition
pymol
3.4 years ago by
iamsmor
• 0
2
votes
6
replies
2.8k
views
Superimpose two proteins
python
pymol
updated 2.2 years ago by
Ram
45k • written 3.4 years ago by
iamsmor
• 0
0
votes
1
reply
903
views
Protein protein interaction network
cytoscape
DEGs
NDExintegratedquery
networkanalyst
updated 3.4 years ago by
scooter
▴ 650 • written 3.4 years ago by
iamsmor
• 0
0
votes
0
replies
706
views
GREIN tool
DEG
GREIN
updated 2.2 years ago by
Ram
45k • written 3.4 years ago by
iamsmor
• 0
0
votes
2
replies
1.1k
views
Entrez e-link Puchem compound
pubchem
elink
entrez
updated 2.2 years ago by
Ram
45k • written 3.4 years ago by
iamsmor
• 0
1
vote
2
replies
2.0k
views
GEO query package error
R
GEOquery
RStudio
updated 2.2 years ago by
Ram
45k • written 3.4 years ago by
iamsmor
• 0
3
votes
5
replies
1.5k
views
blast two protein by pdb id
BLAST
PROTEIN
PYTHON
updated 3.4 years ago by
Asaf
10k • written 3.4 years ago by
iamsmor
• 0
1
vote
1
reply
1.3k
views
Gene enrichment analysis R studio error
RStudio
updated 3.5 years ago by
Thomas
▴ 10 • written 3.8 years ago by
iamsmor
• 0
0
votes
2
replies
1.7k
views
Gene Enrichment
RStudio
enrichment
readgmt
gene
updated 3.8 years ago by
Shred
★ 1.6k • written 3.8 years ago by
iamsmor
• 0
1
vote
2
replies
1.3k
views
create index bam without having sam file
bam
updated 2.2 years ago by
Ram
45k • written 3.8 years ago by
iamsmor
• 0
0
votes
1
reply
1.0k
views
transcript id for gene id in ballgown
R
DE
ballgown
updated 2.2 years ago by
Ram
45k • written 3.8 years ago by
iamsmor
• 0
3
votes
4
replies
1.8k
views
Ballgown DE analysis
R
ballgown
Differential-expression
updated 2.2 years ago by
Ram
45k • written 3.8 years ago by
iamsmor
• 0
4
votes
5
replies
2.0k
views
tranfering sam file easy and fast way
SAM
RNA-seq
hisat2
updated 2.2 years ago by
Ram
45k • written 3.9 years ago by
iamsmor
• 0
2
votes
6
replies
4.9k
views
hisat2 :Killed (ERR): hisat2-align exited with value 137
RNA-seq
alignment
hisat2
updated 2.2 years ago by
Ram
45k • written 3.9 years ago by
iamsmor
• 0
0
votes
1
reply
1.2k
views
RNA seq alignment
RNA-seq
hisat2
updated 2.2 years ago by
Ram
45k • written 3.9 years ago by
iamsmor
• 0
3
votes
6
replies
5.9k
views
samtools sorts allocate memory for bam_mem issues
samtools
RNA-seq
updated 2.4 years ago by
Ram
45k • written 3.9 years ago by
iamsmor
• 0
2
votes
5
replies
2.1k
views
Find right adapter sequence for trimming
fastqc
flexbar
RNA-seq
updated 2.2 years ago by
Ram
45k • written 3.9 years ago by
iamsmor
• 0
1
vote
2
replies
1.4k
views
Single end read adapter trimming via flexbar
adapter
flexbar
trimming
3.9 years ago by
iamsmor
• 0
32 results • Page
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