User: Bara'a

gravatar for Bara'a
Bara'a220
Reputation:
220
Status:
Trusted
Location:
Amman - Jordan
Last seen:
1 month, 3 weeks ago
Joined:
4 years, 7 months ago
Email:
b*************@yahoo.com

M.Sc. Information Systems / University of Jordan

Posts by Bara'a

<prev • 104 results • page 1 of 11 • next >
0
votes
0
answers
225
views
0
answers
Comment: C: Converting runpsipred Script to Work on Windows OS
... I tried to provide the full path for my executables and database but still not working !! ...
written 7 weeks ago by Bara'a220
0
votes
0
answers
225
views
0
answers
Comment: C: Converting runpsipred Script to Work on Windows OS
... Yes all my files are on the same directory !! ...
written 7 weeks ago by Bara'a220
1
vote
0
answers
225
views
0
answers
Comment: C: Converting runpsipred Script to Work on Windows OS
... Thank you for the detailed explanation, that was really convincing ... I guess they succeeded in locking users -like me- in for nearly 10 years, but it's time to move to Linux and open source OS community as I LOVE Bioinformatics and pursuing my PhD in this interesting field. So, if I have to bite t ...
written 7 weeks ago by Bara'a220
0
votes
0
answers
225
views
0
answers
Comment: C: Converting runpsipred Script to Work on Windows OS
... You are absolutely right regarding this ... I thought it would be an easy task to do so but apparently it seems impossible with the world heading towards open source OS. I guess I'm going to break the contract and surrender 👐 ...
written 7 weeks ago by Bara'a220
0
votes
0
answers
225
views
0
answers
Comment: C: Converting runpsipred Script to Work on Windows OS
... That's a good solution though I must do a script to run psipred from a windows OS... why it's not supported, why ?!😭 ...
written 8 weeks ago by Bara'a220
0
votes
0
answers
225
views
0
answers
Comment: C: Converting runpsipred Script to Work on Windows OS
... Yes, the file is there in the path specified by the error message but it is not seen by the command for some reason !! I've searched for the output that's supposed to be generated by the command but found nothing ... why on earth psipred is not for windows, that's really disappointing. ...
written 8 weeks ago by Bara'a220
0
votes
0
answers
225
views
0
answers
Comment: C: Converting runpsipred Script to Work on Windows OS Via Python
... Yes you're right, it's not making use of any python facilities yet ... I'm working on obtaining psipred results in order to be further plotted for specific purposes using some python modules. Sorry if that causes any inconvenience. ...
written 8 weeks ago by Bara'a220
0
votes
0
answers
225
views
0
answers
Comment: C: Converting runpsipred Script to Work on Windows OS Via Python
... Ok... I've tried performing psiblast on a relatively small database just to check if it's working as expected: import os import sys os.system('blastdbcmd -db uniref90 -entry nm_000122 -outfmt "%f" -out test_query.txt') os.system('blastn -query test_query.txt -db uniref90 -out output ...
written 8 weeks ago by Bara'a220
8
votes
0
answers
225
views
5 follow
0
answers
Converting runpsipred Script to Work on Windows OS
... Hi all... Following the [psipred][1] installation instruction I have installed blast+ executables on G:\ drive along with the impala utility from legacy blast (makemat and copymat binary files) in bin folder and configured the environment variable to the path they were installed on then I have ins ...
psipred windows written 8 weeks ago by Bara'a220
0
votes
0
answers
440
views
0
answers
Comment: C: Research Consultation for a phD Dissertation
... So you have easily figured things out !! indeed there is something going on between me and my former supervisor, we are at odds and have completely two different perspectives towards several points. He is still active in that area of research and I cant proceed with the old work due to the previous ...
written 7 months ago by Bara'a220

Latest awards to Bara'a

Centurion 8 weeks ago, created 100 posts.
Popular Question 7 months ago, created a question with more than 1,000 views. For Rename Duplicate ID's for Different Fasta Sequences on Windows 7
Popular Question 7 months ago, created a question with more than 1,000 views. For Profile picture on Biostars
Popular Question 15 months ago, created a question with more than 1,000 views. For Rename Duplicate ID's for Different Fasta Sequences on Windows 7
Popular Question 24 months ago, created a question with more than 1,000 views. For Rename Duplicate ID's for Different Fasta Sequences on Windows 7
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Rename Duplicate ID's for Different Fasta Sequences on Windows 7
Teacher 3.2 years ago, created an answer with at least 3 up-votes. For A: what is your daily must see bioinformatics web site?
Scholar 3.6 years ago, created an answer that has been accepted. For A: Rename Duplicate ID's for Different Fasta Sequences on Windows 7
Popular Question 3.8 years ago, created a question with more than 1,000 views. For Can't access individual attributes of tabular outfmt 6 blast output while parsing
Voter 3.8 years ago, voted more than 100 times.
Popular Question 3.8 years ago, created a question with more than 1,000 views. For Can't access individual attributes of tabular outfmt 6 blast output while parsing
Supporter 3.8 years ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 642 users visited in the last hour