User: deepaksrna

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deepaksrna40
Reputation:
40
Status:
New User
Location:
Argentina
Last seen:
2 years, 3 months ago
Joined:
6 years, 7 months ago
Email:
d*********@gmail.com

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Posts by deepaksrna

<prev • 5 results • page 1 of 1 • next >
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Comment: C: haplotypecaller can not run in single bam file
... Print reads output bam ...
written 2.3 years ago by deepaksrna40
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Comment: A: haplotypecaller can not run in single bam file
... It works without GVCFspecification, but to generate the gvcf file I need the GVCF argument ...
written 2.3 years ago by deepaksrna40
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6 follow
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haplotypecaller can not run in single bam file
... Hi all, I an new to WGS analysis, i am trying to run haplotypecaller in one bam file. java -jar GenomeAnalysisTK.jar -T HaplotypeCaller -R GRCh37/hs37d5.fa -I LG_GWG.1.bam -D reference/gatkbundle/dbsnp_138.b37.vcf -o LG_GWG.output.g.vcf -ERC GVCF -nct 4 can anyone help me to figure out th ...
haplotypecaller wgs -erc gatk3 written 2.3 years ago by deepaksrna40
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dn/ds ratio for somatic mutation
... HI all I would like to calculate the dn/ds ratio for a specifc gene according to the somatic mutation data available from TCGA. Is there any tool which can help to perform.     ...
tcga mutation dna written 4.9 years ago by deepaksrna40 • updated 4.9 years ago by Juke344.7k
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cancer patients available in each tumor types in DNA-seq in TCGA ?
... Hi all, How to calculate the total number of cancer patients available in each tumor types in DNA-seq in TCGA ? ...
dnaseq tcga written 5.0 years ago by deepaksrna40 • updated 5.0 years ago by roy.granit830

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Popular Question 4.8 years ago, created a question with more than 1,000 views. For dn/ds ratio for somatic mutation

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