User: agolicz

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agolicz30
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30
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New User
Location:
Australia
Last seen:
1 year, 1 month ago
Joined:
5 years, 4 months ago
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Posts by agolicz

<prev • 6 results • page 1 of 1 • next >
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Comment: C: RNASeq statistical analysis
... Yes. Option one. But the groups are independent so it's group1: gene1+gene2+gene3 vs group2: gene4+gene5+gene6. I essentially want to see if the expression in group2 is lower/higher than group1 at a given point. I have added some background information. Hopefully that could help? ...
written 13 months ago by agolicz30
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RNASeq statistical analysis
... I am doing some statistical analysis of RNASeq data and I have run into a bit of a problem. Instead of looking at comparison of individual genes I want to compare groups of genes. The setup is as follows: I have two independent groups of genes. For each gene I have three measures from three biologic ...
rna-seq written 13 months ago by agolicz30
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Comment: C: blast - difference between database and subject
... If I remember correctly there is a difference in e-value depending on whether you use -db or -subject. ...
written 24 months ago by agolicz30
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Answer: A: Hisat R strandness aligning same strand as F strandness, how to do it correctly?
... It looks to me like Hisat2 does not reverse complement the read but adds correct XS tag. Which is pretty much what it says in the manual. If you mouse over the read you will see that the XS tag (either + or -) is correct with respect to annotated transcript. ...
written 24 months ago by agolicz30
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Comment: C: Stranger Things: unexpected limitations of popular tools
... Could not agree more! I would not even call it hills... ...
written 24 months ago by agolicz30
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Answer: A: Samlocusiterator Skips Every Second Locus
... This bug is fixed now, as of picard tools v1.88. In case somebody also needs non-covered regions. ...
written 5.4 years ago by agolicz30

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