User: Alan R. Fachini

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20
Status:
New User
Location:
São Paulo, Brazil
Website:
http://alfakini.cc/
Last seen:
2 years, 6 months ago
Joined:
5 years, 4 months ago
Email:
f******@usp.br

Applying machine learning to generate genes co-expression networks.

Posts by Alan R. Fachini

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Answer: A: Rna-Seq Datasets For Co-Expression Network Benchmark
... Maybe I can use the Gene Expression Omnibus for this. What are others using? "GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. Tools are provided to help users query and download experiments and curated gen ...
written 5.3 years ago by Alan R. Fachini20
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Rna-Seq Datasets For Co-Expression Network Benchmark
... Hi guys. When working with image classification, it is common to have a benchmark datasets used by all research papers to test new algorithms and hypothesis. I would like to know if there are common RNA-seq datasets out there used for co-expression network analysis and where I could find them. I.e.: ...
network written 5.3 years ago by Alan R. Fachini20
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Comment: C: Lesson Plan To Teach Python For Absolute Beginners
... Rosalind is a platform for learning bioinformatics, they have an session dedicated to learning Python, and others with bioinformatics problems. You could use it for a "hands-on" practice: rosalind.info/problems/locations/ ...
written 5.3 years ago by Alan R. Fachini20
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How To Build Co-Expression Networks?
... Hey guys. I am starting in a new project (in a cooperation between biologists and computer scientists) where we want to build Gene Co-expression Networks from RNA-seq data (in BAM format) to try to identify genes that are expressed together and use this information to classify bees in groups, i.e.: ...
bioinformatics gene-expression written 5.3 years ago by Alan R. Fachini20 • updated 4.7 years ago by Biostar ♦♦ 20

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Popular Question 5.2 years ago, created a question with more than 1,000 views. For How To Build Co-Expression Networks?

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