User: Nina

gravatar for Nina
Nina360
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360
Status:
New User
Location:
Vancouver, BC, Canada
Last seen:
7 years, 10 months ago
Joined:
9 years, 1 month ago
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n***********@gmail.com

Posts by Nina

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Answer: A: How To Remove The Qc-Failure Reads?
... QC failure of a read is recorded in the bitwise flag of the sam record. so yes "samtools view -F 512" is exactly what you want to use if you want to create a new bam that excludes the QC failed reads. (I forget if you'll also need to add the -h option so samtools has the header info required to con ...
written 8.9 years ago by Nina360

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