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Why download GRch38 when my selected filter is only hg19 from ENCODE Data Experiment Matrix?
ENCODE Data Experiment Matrix
4.6 years ago by burcakotlu ▴ 40
2
votes
2
replies
944
views
Is there a file information dictionary for files downloaded from ENCODE through batch download?
ENCODE
updated 3 days ago by 43k • written 4.6 years ago by ▴ 40
2
votes
5
replies
1.5k
views
What is the difference between tissues and cell lines in ENCODE>
ENCODE cell line
4.6 years ago by burcakotlu ▴ 40
2
votes
5
replies
1.6k
views
Can there be overlaps in a bigWig or bigBed file?
bigBed bigWig
updated 4.6 years ago by 35k • written 4.6 years ago by ▴ 40
0
votes
1
reply
2.8k
views
How to download *.FPKM-UQ.txt.gz files from TCGA GDC for some certain samples using python?
TCGA GDC python sample
6.6 years ago by burcakotlu ▴ 40
3
votes
6
replies
2.0k
views
Calculate pairwise LD for two given genomic loci (not rsIDs)?
pairwise LD two given genomic loci
updated 7.2 years ago by ★ 2.3k • written 7.2 years ago by ▴ 40
0
votes
0
replies
1.7k
views
Getting DNA sequences by ncbi eutils for a specific assembly e.g.: hg19, hg38, GRCh37.p13 or GRCh38.p6?
ncbi eutils efetch dna sequences
7.3 years ago by burcakotlu ▴ 40
2
votes
1
reply
1.7k
views
Can we get gene information (such as gene HUGO symbol, molecular consequences, gene RefSeq Id) for a given rsID using ncbi eutils?
rsID gene symbol gene Refseq ID ncbi eutils
7.4 years ago by burcakotlu ▴ 40
0
votes
1
reply
1.7k
views
Getting assembly of an rsID using ncbi eutils?
assembly rsId ncbi eutils
7.4 years ago by burcakotlu ▴ 40
1
vote
6
replies
1.6k
views
Having problem in getting rsIDs in a given gene interval using NCBI etuils!
ncbi eutils getting rsIDs in a
7.4 years ago by burcakotlu ▴ 40
6
votes
4
replies
4.3k
views
Getting Sequences Of A Given Chrnumber, Start And End Positions For Grch37/Hg19 Using Eutils In Java
java
updated 7.9 years ago by ▴ 90 • written 10.1 years ago by ▴ 40
3
votes
4
replies
2.9k
views
Having problem with NCBI remap.pl
NCBI remap
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 40
0
votes
1
reply
3.1k
views
remaping rs386000 from GRCh38 to GRCh37.p13 using NCBI remap_api.pl
REMAP NCBI
updated 2.1 years ago by 43k • written 9.4 years ago by ▴ 40
0
votes
0
replies
1.8k
views
Is there a file for AssemblyName 2 RefSeq Assembly Accession (ID) for homo sapiens?
Accession RefSeq NCBI AssemblyName
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 40
1
vote
6
replies
3.8k
views
Getting java.lang.NumberFormatException while " Rs rs=unmarshaller.unmarshal(reader, Rs.class).getValue(); "
efetch unmarshal
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 40
4
votes
2
replies
4.0k
views
Is there a NCBI eutils or something else to liftover or remap GRCh37.p13 coordinates to GRCh38 to be called from java?
java remap liftover eutils
updated 2.3 years ago by 43k • written 9.7 years ago by ▴ 40
1
vote
1
reply
2.0k
views
How To Parse Esearch Xml Output In Java?
java entrez
updated 10.1 years ago by 161k • written 10.1 years ago by ▴ 40
2
votes
3
replies
3.6k
views
Finding Rsids Of Snps For A Given Chrname, Start And End Positions For Grch37/Hg19
hg19 java eutils
updated 10.1 years ago by 161k • written 10.1 years ago by ▴ 40
4
votes
8
replies
3.2k
views
How To Get A Dbsnp Data From Java?
dbsnp java
10.1 years ago by burcakotlu ▴ 40
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