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208
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Comment: Comment: Advanced search for the sequences on NCBI website
8 days ago by Denis ▴ 230
5
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2
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208
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Advanced search for the sequences on NCBI website
GenBank NCBI
8 days ago by Denis ▴ 230
0
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0
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5.1k
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Comment: Comment: Remove not polymorphic sites from VCF
5 months ago by Denis ▴ 230
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0
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173
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Filter out individuals of the multisample VCF file with a high proportion of missing calls by bcftools
SNP VCF missing_data genotyping
5 months ago by Denis ▴ 230
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0
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5.1k
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Comment: Comment: Remove not polymorphic sites from VCF
5 months ago by Denis ▴ 230
0
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1
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1.5k
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Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
6 months ago by Denis ▴ 230
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1
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1.5k
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Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
6 months ago by Denis ▴ 230
0
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0
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175
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Mapping of tag sequences to the reference genome in Tassel 5 GBS v2 Pipeline
genotyping Genotyping-by-sequencing Tassel Tassel_GBS_Pipeline bowtie2
6 months ago by Denis ▴ 230
2
votes
1
reply
291
views
Get rid of multimapped and unmapped reads for snp calling improvement
genome mapping SNP Illumina
updated 7 months ago by 64k • written 7 months ago by ▴ 230
0
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0
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382
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Does the SOAP (BGI) website mirror exist
software SOAP
updated 9 months ago by • 0 • written 10 months ago by ▴ 230
0
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0
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567
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Comment: Comment: Understandig of some bbmerge command line settings
10 months ago by Denis ▴ 230
2
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2
replies
567
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Understandig of some bbmerge command line settings
software amplicons bbmerge
10 months ago by Denis ▴ 230
5
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7
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1.3k
views
Primers trimming from Illumina paired-end reads by BBDuk software
Illumina adapter BBDuk trimming amplicons PCR
updated 11 months ago by 119k • written 11 months ago by ▴ 230
0
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1
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1.3k
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Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
10 months ago by Denis ▴ 230
0
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1
reply
1.3k
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Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
11 months ago by Denis ▴ 230
0
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1
reply
1.3k
views
Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
11 months ago by Denis ▴ 230
0
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0
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219
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Reads preparation steps for amplicon metagenomics
PCR Metagenomics
11 months ago by Denis ▴ 230
0
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0
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848
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Comment: Comment: de novo annotation of plants genome
14 months ago by Denis ▴ 230
0
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0
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360
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Comment: Comment: Is removing of the one trailing nucleotide in Illumina reads necessary step of
14 months ago by Denis ▴ 230
3
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2
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360
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Is removing of the one trailing nucleotide in Illumina reads necessary step of data preprocessing
Illumina Preprocessing
14 months ago by Denis ▴ 230
5
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3
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4.5k
views
The fastest way to download a list of SRR accessions from Sequence Read Archive with sratoolkit
sequence genome
updated 17 months ago by ▴ 10 • written 2.6 years ago by ▴ 230
0
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0
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697
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Comment: C: Running Mauve on circular genomes
19 months ago by Denis ▴ 230
0
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1
reply
697
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Comment: C: Running Mauve on circular genomes
19 months ago by Denis ▴ 230
0
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1
reply
697
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Comment: C: Running Mauve on circular genomes
19 months ago by Denis ▴ 230
0
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0
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731
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Comment: C: Using DESeq2 for DE analysis of microRNA data
19 months ago by Denis ▴ 230
5
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2
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731
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Using DESeq2 for DE analysis of microRNA data
RNA-Seq R
19 months ago by Denis ▴ 230
0
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0
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1.1k
views
Comment: C: Merge overlapping and adjacent features in the BED file having the same label in
20 months ago by Denis ▴ 230
5
votes
5
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1.1k
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Merge overlapping and adjacent features in the BED file having the same label in the name (4-th) column
genome R
updated 20 months ago by 34k • written 20 months ago by ▴ 230
0
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0
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1.1k
views
Comment: C: Merge overlapping and adjacent features in the BED file having the same label in
20 months ago by Denis ▴ 230
0
votes
0
replies
398
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Circos could not open image.conf error
software error
21 months ago by Denis ▴ 230
0
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6
replies
697
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Running Mauve on circular genomes
genome alignment
21 months ago by Denis ▴ 230
0
votes
1
reply
2.3k
views
Comment: C: How to perform alignment of nucleotide sequence containing ambiguous bases
2.2 years ago by Denis ▴ 230
0
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1
reply
2.3k
views
Comment: C: How to perform alignment of nucleotide sequence containing ambiguous bases
2.2 years ago by Denis ▴ 230
0
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1
reply
36k
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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
2.4 years ago by Denis ▴ 230
0
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1
reply
36k
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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
2.4 years ago by Denis ▴ 230
0
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0
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1.6k
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Comment: C: Prefetch error while downloading data from sequence read archive
2.4 years ago by Denis ▴ 230
0
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0
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1.6k
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Comment: C: Prefetch error while downloading data from sequence read archive
2.4 years ago by Denis ▴ 230
0
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2
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1.6k
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Comment: C: Prefetch error while downloading data from sequence read archive
2.4 years ago by Denis ▴ 230
2
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5
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1.6k
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Prefetch error while downloading data from sequence read archive
software error
2.4 years ago by Denis ▴ 230
0
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0
replies
2.9k
views
Comment: C: Aspera ascp command line utility inside prefetch call to facilitate SRA data dow
2.4 years ago by Denis ▴ 230
0
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1
reply
2.9k
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Comment: C: Aspera ascp command line utility inside prefetch call to facilitate SRA data dow
2.4 years ago by Denis ▴ 230
6
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6
replies
2.9k
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Aspera ascp command line utility inside prefetch call to facilitate SRA data downloading
genome next-gen
2.4 years ago by Denis ▴ 230
0
votes
1
reply
1.3k
views
Comment: C: Freebayes variant calling understanding
2.4 years ago by Denis ▴ 230
1
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2
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1.3k
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Comment: C: Freebayes variant calling understanding
2.4 years ago by Denis ▴ 230
0
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0
replies
4.7k
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Comment: C: Extract SNPs flanking sequences based on VCF and genome Fasta files
2.6 years ago by Denis ▴ 230
0
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0
replies
1.1k
views
RNA editing sites prediction in plant mitogenome without rna-seq data
rna editing
updated 2.6 years ago by 20 • written 5.3 years ago by ▴ 230
11
votes
7
replies
3.8k
views
Forum: Using Graphics Processing Units (GPUs) in bioinformatics
algorithm GPU Forum
updated 2.7 years ago by ▴ 20 • written 3.0 years ago by ▴ 230
0
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0
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1.1k
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Comment: C: Can I combine the GBS data with Whole Genome Resequencing for GWAS analysis
2.8 years ago by Denis ▴ 230
2
votes
2
replies
375
views
Frontmost snp callers for plant genomes
alignment next-gen SNP genome
updated 2.8 years ago by 13k • written 2.8 years ago by ▴ 230
1
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1
reply
4.2k
views
Comment: C: Making nice plots based on the different metrics from VCF file
2.8 years ago by Denis ▴ 230
129 results • Page 1 of 3
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