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2
votes
1
reply
512
views
Proper Bowtie2 settings for snp calling applications
Illumina SNP Freebayes Bowtie2
updated 9 months ago by 43k • written 9 months ago by ▴ 310
2
votes
1
reply
699
views
Comment: Comment: Illumina reads preprocessing best practice for snp calling applications
9 months ago by Denis ▴ 310
5
votes
3
replies
699
views
Illumina reads preprocessing best practice for snp calling applications
Illumina snp
updated 4 days ago by • 0 • written 9 months ago by ▴ 310
0
votes
0
replies
352
views
Correct tRNA genes nomenclature in plant chloroplast genomes
chloroplast tRNA genes genome
11 months ago by Denis ▴ 310
0
votes
0
replies
430
views
Clade model C of PAML to detect positive selection in coding nucleotide sequences
selection evolution PAML CDS
13 months ago by Denis ▴ 310
0
votes
0
replies
372
views
Application of the branch, site and branch-site models for detecting selection with codeml (PAML)
evolution codeml PAML
14 months ago by Denis ▴ 310
0
votes
0
replies
297
views
Alternatives to DendroCypher tool for large trees labeling
selection PAML codeml pressure
14 months ago by Denis ▴ 310
0
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1
reply
994
views
Comment: Comment: Phylogeny inference on complete chloroplast genomes with IQ-TREE software
15 months ago by Denis ▴ 310
3
votes
3
replies
994
views
Phylogeny inference on complete chloroplast genomes with IQ-TREE software
IQ-TREE genomics phylogenetics
updated 15 months ago by ★ 1.2k • written 15 months ago by ▴ 310
11
votes
6
replies
7.2k
views
6 follow
Making nice plots based on the different metrics from VCF file
snp R genome
updated 17 months ago by ▴ 270 • written 5.4 years ago by ▴ 310
0
votes
0
replies
659
views
Comment: Comment: Advanced search for the sequences on NCBI website
20 months ago by Denis ▴ 310
6
votes
2
replies
659
views
Advanced search for the sequences on NCBI website
GenBank NCBI
20 months ago by Denis ▴ 310
0
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0
replies
8.6k
views
Comment: Comment: Remove not polymorphic sites from VCF
2.2 years ago by Denis ▴ 310
0
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0
replies
406
views
Filter out individuals of the multisample VCF file with a high proportion of missing calls by bcftools
SNP VCF missing_data genotyping
2.2 years ago by Denis ▴ 310
0
votes
0
replies
8.6k
views
Comment: Comment: Remove not polymorphic sites from VCF
2.2 years ago by Denis ▴ 310
0
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1
reply
2.4k
views
Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
2.2 years ago by Denis ▴ 310
0
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1
reply
2.4k
views
Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
2.2 years ago by Denis ▴ 310
0
votes
0
replies
472
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Mapping of tag sequences to the reference genome in Tassel 5 GBS v2 Pipeline
genotyping Genotyping-by-sequencing Tassel Tassel_GBS_Pipeline bowtie2
2.2 years ago by Denis ▴ 310
2
votes
1
reply
601
views
Get rid of multimapped and unmapped reads for snp calling improvement
genome mapping SNP Illumina
updated 2.3 years ago by 82k • written 2.3 years ago by ▴ 310
0
votes
0
replies
653
views
Does the SOAP (BGI) website mirror exist
software SOAP
updated 2.5 years ago by • 0 • written 2.6 years ago by ▴ 310
0
votes
0
replies
1.1k
views
Comment: Comment: Understandig of some bbmerge command line settings
2.6 years ago by Denis ▴ 310
2
votes
2
replies
1.1k
views
Understandig of some bbmerge command line settings
software amplicons bbmerge
2.6 years ago by Denis ▴ 310
6
votes
7
replies
3.1k
views
Primers trimming from Illumina paired-end reads by BBDuk software
Illumina adapter BBDuk trimming amplicons PCR
updated 2.6 years ago by 141k • written 2.6 years ago by ▴ 310
0
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1
reply
3.1k
views
Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
2.6 years ago by Denis ▴ 310
0
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1
reply
3.1k
views
Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
2.6 years ago by Denis ▴ 310
0
votes
1
reply
3.1k
views
Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
2.6 years ago by Denis ▴ 310
0
votes
0
replies
449
views
Reads preparation steps for amplicon metagenomics
PCR Metagenomics
2.6 years ago by Denis ▴ 310
0
votes
0
replies
1.4k
views
Comment: Comment: de novo annotation of plants genome
2.9 years ago by Denis ▴ 310
0
votes
0
replies
646
views
Comment: Comment: Is removing of the one trailing nucleotide in Illumina reads necessary step of
2.9 years ago by Denis ▴ 310
3
votes
2
replies
646
views
Is removing of the one trailing nucleotide in Illumina reads necessary step of data preprocessing
Illumina Preprocessing
2.9 years ago by Denis ▴ 310
6
votes
3
replies
8.7k
views
The fastest way to download a list of SRR accessions from Sequence Read Archive with sratoolkit
sequence genome
updated 3.1 years ago by ▴ 20 • written 4.3 years ago by ▴ 310
0
votes
0
replies
1.3k
views
Comment: C: Running Mauve on circular genomes
3.3 years ago by Denis ▴ 310
0
votes
1
reply
1.3k
views
Comment: C: Running Mauve on circular genomes
3.3 years ago by Denis ▴ 310
0
votes
1
reply
1.3k
views
Comment: C: Running Mauve on circular genomes
3.3 years ago by Denis ▴ 310
0
votes
0
replies
1.2k
views
Comment: C: Using DESeq2 for DE analysis of microRNA data
3.3 years ago by Denis ▴ 310
6
votes
2
replies
1.2k
views
Using DESeq2 for DE analysis of microRNA data
RNA-Seq R
3.3 years ago by Denis ▴ 310
0
votes
0
replies
2.0k
views
Comment: C: Merge overlapping and adjacent features in the BED file having the same label in
3.4 years ago by Denis ▴ 310
5
votes
5
replies
2.0k
views
Merge overlapping and adjacent features in the BED file having the same label in the name (4-th) column
genome R
updated 3.4 years ago by 35k • written 3.4 years ago by ▴ 310
0
votes
0
replies
2.0k
views
Comment: C: Merge overlapping and adjacent features in the BED file having the same label in
3.4 years ago by Denis ▴ 310
0
votes
0
replies
648
views
Circos could not open image.conf error
software error
3.5 years ago by Denis ▴ 310
0
votes
6
replies
1.3k
views
Running Mauve on circular genomes
genome alignment
3.5 years ago by Denis ▴ 310
0
votes
1
reply
4.1k
views
Comment: C: How to perform alignment of nucleotide sequence containing ambiguous bases
3.9 years ago by Denis ▴ 310
0
votes
1
reply
4.1k
views
Comment: C: How to perform alignment of nucleotide sequence containing ambiguous bases
3.9 years ago by Denis ▴ 310
0
votes
1
reply
46k
views
Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
4.1 years ago by Denis ▴ 310
0
votes
1
reply
46k
views
Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
4.1 years ago by Denis ▴ 310
0
votes
0
replies
2.3k
views
Comment: C: Prefetch error while downloading data from sequence read archive
4.1 years ago by Denis ▴ 310
0
votes
0
replies
2.3k
views
Comment: C: Prefetch error while downloading data from sequence read archive
4.1 years ago by Denis ▴ 310
0
votes
2
replies
2.3k
views
Comment: C: Prefetch error while downloading data from sequence read archive
4.1 years ago by Denis ▴ 310
2
votes
5
replies
2.3k
views
Prefetch error while downloading data from sequence read archive
software error
4.1 years ago by Denis ▴ 310
0
votes
0
replies
3.9k
views
Comment: C: Aspera ascp command line utility inside prefetch call to facilitate SRA data dow
4.1 years ago by Denis ▴ 310
138 results • Page 1 of 3
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