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445
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Comment: Comment: Combine GBS and WGS data for variant calling in GWAS analysis
8 weeks ago by Denis ▴ 310
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0
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650
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Comment: Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
9 weeks ago by Denis ▴ 310
0
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1
reply
650
views
Comment: Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
9 weeks ago by Denis ▴ 310
0
votes
1
reply
650
views
Comment: Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
9 weeks ago by Denis ▴ 310
0
votes
1
reply
650
views
Comment: Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
9 weeks ago by Denis ▴ 310
4
votes
7
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650
views
Currently recommended Oxford Nanopore data basecalling and preprocessing pipeline for de novo assembly applications
ONT assembly Nanopore preprocessing basecalling
9 weeks ago by Denis ▴ 310
2
votes
1
reply
718
views
Proper Bowtie2 settings for snp calling applications
Illumina SNP Freebayes Bowtie2
updated 18 months ago by 44k • written 18 months ago by ▴ 310
2
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1
reply
1.1k
views
Comment: Comment: Illumina reads preprocessing best practice for snp calling applications
18 months ago by Denis ▴ 310
5
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3
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1.1k
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Illumina reads preprocessing best practice for snp calling applications
Illumina snp
updated 9 months ago by • 0 • written 18 months ago by ▴ 310
0
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0
replies
468
views
Correct tRNA genes nomenclature in plant chloroplast genomes
chloroplast tRNA genes genome
20 months ago by Denis ▴ 310
0
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0
replies
580
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Clade model C of PAML to detect positive selection in coding nucleotide sequences
selection evolution PAML CDS
22 months ago by Denis ▴ 310
0
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0
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526
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Application of the branch, site and branch-site models for detecting selection with codeml (PAML)
evolution codeml PAML
23 months ago by Denis ▴ 310
0
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0
replies
399
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Alternatives to DendroCypher tool for large trees labeling
selection PAML codeml pressure
24 months ago by Denis ▴ 310
0
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1
reply
1.4k
views
Comment: Comment: Phylogeny inference on complete chloroplast genomes with IQ-TREE software
2.0 years ago by Denis ▴ 310
3
votes
3
replies
1.4k
views
Phylogeny inference on complete chloroplast genomes with IQ-TREE software
IQ-TREE genomics phylogenetics
updated 2.0 years ago by ★ 1.4k • written 2.0 years ago by ▴ 310
11
votes
6
replies
8.3k
views
6 follow
Making nice plots based on the different metrics from VCF file
snp R genome
updated 2.2 years ago by ▴ 290 • written 6.1 years ago by ▴ 310
0
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0
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842
views
Comment: Comment: Advanced search for the sequences on NCBI website
2.5 years ago by Denis ▴ 310
6
votes
2
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842
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Advanced search for the sequences on NCBI website
GenBank NCBI
2.5 years ago by Denis ▴ 310
0
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0
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9.9k
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Comment: Comment: Remove not polymorphic sites from VCF
2.9 years ago by Denis ▴ 310
0
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0
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512
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Filter out individuals of the multisample VCF file with a high proportion of missing calls by bcftools
SNP VCF missing_data genotyping
2.9 years ago by Denis ▴ 310
0
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0
replies
9.9k
views
Comment: Comment: Remove not polymorphic sites from VCF
2.9 years ago by Denis ▴ 310
0
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1
reply
2.9k
views
Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
3.0 years ago by Denis ▴ 310
0
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1
reply
2.9k
views
Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
3.0 years ago by Denis ▴ 310
0
votes
0
replies
595
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Mapping of tag sequences to the reference genome in Tassel 5 GBS v2 Pipeline
genotyping Genotyping-by-sequencing Tassel Tassel_GBS_Pipeline bowtie2
3.0 years ago by Denis ▴ 310
2
votes
1
reply
732
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Get rid of multimapped and unmapped reads for snp calling improvement
genome mapping SNP Illumina
updated 3.1 years ago by 86k • written 3.1 years ago by ▴ 310
0
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0
replies
751
views
Does the SOAP (BGI) website mirror exist
software SOAP
updated 3.3 years ago by • 0 • written 3.3 years ago by ▴ 310
0
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0
replies
1.3k
views
Comment: Comment: Understandig of some bbmerge command line settings
3.3 years ago by Denis ▴ 310
2
votes
2
replies
1.3k
views
Understandig of some bbmerge command line settings
software amplicons bbmerge
3.3 years ago by Denis ▴ 310
6
votes
7
replies
3.7k
views
Primers trimming from Illumina paired-end reads by BBDuk software
Illumina adapter BBDuk trimming amplicons PCR
updated 3.3 years ago by 148k • written 3.3 years ago by ▴ 310
0
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1
reply
3.7k
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Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
3.3 years ago by Denis ▴ 310
0
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1
reply
3.7k
views
Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
3.3 years ago by Denis ▴ 310
0
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1
reply
3.7k
views
Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
3.3 years ago by Denis ▴ 310
0
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0
replies
536
views
Reads preparation steps for amplicon metagenomics
PCR Metagenomics
3.4 years ago by Denis ▴ 310
0
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0
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1.7k
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Comment: Comment: de novo annotation of plants genome
3.6 years ago by Denis ▴ 310
0
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0
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790
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Comment: Comment: Is removing of the one trailing nucleotide in Illumina reads necessary step of
3.7 years ago by Denis ▴ 310
3
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2
replies
790
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Is removing of the one trailing nucleotide in Illumina reads necessary step of data preprocessing
Illumina Preprocessing
3.7 years ago by Denis ▴ 310
6
votes
3
replies
9.9k
views
The fastest way to download a list of SRR accessions from Sequence Read Archive with sratoolkit
sequence genome
updated 3.8 years ago by ▴ 20 • written 5.0 years ago by ▴ 310
0
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0
replies
1.6k
views
Comment: C: Running Mauve on circular genomes
4.0 years ago by Denis ▴ 310
0
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1
reply
1.6k
views
Comment: C: Running Mauve on circular genomes
4.0 years ago by Denis ▴ 310
0
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1
reply
1.6k
views
Comment: C: Running Mauve on circular genomes
4.0 years ago by Denis ▴ 310
0
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0
replies
1.4k
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Comment: C: Using DESeq2 for DE analysis of microRNA data
4.1 years ago by Denis ▴ 310
6
votes
2
replies
1.4k
views
Using DESeq2 for DE analysis of microRNA data
RNA-Seq R
4.1 years ago by Denis ▴ 310
0
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0
replies
2.3k
views
Comment: C: Merge overlapping and adjacent features in the BED file having the same label in
4.2 years ago by Denis ▴ 310
5
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5
replies
2.3k
views
Merge overlapping and adjacent features in the BED file having the same label in the name (4-th) column
genome R
updated 4.2 years ago by 36k • written 4.2 years ago by ▴ 310
0
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0
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2.3k
views
Comment: C: Merge overlapping and adjacent features in the BED file having the same label in
4.2 years ago by Denis ▴ 310
0
votes
0
replies
753
views
Circos could not open image.conf error
software error
4.2 years ago by Denis ▴ 310
0
votes
6
replies
1.6k
views
Running Mauve on circular genomes
genome alignment
4.2 years ago by Denis ▴ 310
0
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1
reply
5.0k
views
Comment: C: How to perform alignment of nucleotide sequence containing ambiguous bases
4.7 years ago by Denis ▴ 310
0
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1
reply
5.0k
views
Comment: C: How to perform alignment of nucleotide sequence containing ambiguous bases
4.7 years ago by Denis ▴ 310
0
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1
reply
49k
views
Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
4.8 years ago by Denis ▴ 310
144 results • Page 1 of 3
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