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Comment: Comment: Combine GBS and WGS data for variant calling in GWAS analysis
8 weeks ago by Denis ▴ 310
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0
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640
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Comment: Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
9 weeks ago by Denis ▴ 310
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1
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640
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Comment: Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
9 weeks ago by Denis ▴ 310
0
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1
reply
640
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Comment: Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
9 weeks ago by Denis ▴ 310
0
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1
reply
640
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Comment: Comment: Currently recommended Oxford Nanopore data basecalling and preprocessing pipelin
9 weeks ago by Denis ▴ 310
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1
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1.1k
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Comment: Comment: Illumina reads preprocessing best practice for snp calling applications
18 months ago by Denis ▴ 310
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1
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1.4k
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Comment: Comment: Phylogeny inference on complete chloroplast genomes with IQ-TREE software
2.0 years ago by Denis ▴ 310
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839
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Comment: Comment: Advanced search for the sequences on NCBI website
2.5 years ago by Denis ▴ 310
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9.9k
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Comment: Comment: Remove not polymorphic sites from VCF
2.9 years ago by Denis ▴ 310
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9.9k
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Comment: Comment: Remove not polymorphic sites from VCF
2.9 years ago by Denis ▴ 310
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1
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2.9k
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Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
3.0 years ago by Denis ▴ 310
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1
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2.9k
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Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
3.0 years ago by Denis ▴ 310
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1.3k
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Comment: Comment: Understandig of some bbmerge command line settings
3.3 years ago by Denis ▴ 310
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1
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3.7k
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Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
3.3 years ago by Denis ▴ 310
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1
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3.7k
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Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
3.3 years ago by Denis ▴ 310
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1
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3.7k
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Comment: Comment: Primers trimming from Illumina paired-end reads by BBDuk software
3.3 years ago by Denis ▴ 310
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1.7k
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Comment: Comment: de novo annotation of plants genome
3.6 years ago by Denis ▴ 310
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787
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Comment: Comment: Is removing of the one trailing nucleotide in Illumina reads necessary step of
3.7 years ago by Denis ▴ 310
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1.6k
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Comment: C: Running Mauve on circular genomes
4.0 years ago by Denis ▴ 310
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1
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1.6k
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Comment: C: Running Mauve on circular genomes
4.0 years ago by Denis ▴ 310
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1
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1.6k
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Comment: C: Running Mauve on circular genomes
4.0 years ago by Denis ▴ 310
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1.4k
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Comment: C: Using DESeq2 for DE analysis of microRNA data
4.1 years ago by Denis ▴ 310
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2.3k
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Comment: C: Merge overlapping and adjacent features in the BED file having the same label in
4.2 years ago by Denis ▴ 310
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2.3k
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Comment: C: Merge overlapping and adjacent features in the BED file having the same label in
4.2 years ago by Denis ▴ 310
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1
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5.0k
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Comment: C: How to perform alignment of nucleotide sequence containing ambiguous bases
4.7 years ago by Denis ▴ 310
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1
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5.0k
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Comment: C: How to perform alignment of nucleotide sequence containing ambiguous bases
4.7 years ago by Denis ▴ 310
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1
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49k
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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
4.8 years ago by Denis ▴ 310
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1
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49k
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Comment: C: Fast download of FASTQ files from the European Nucleotide Archive (ENA)
4.8 years ago by Denis ▴ 310
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2.7k
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Comment: C: Prefetch error while downloading data from sequence read archive
4.8 years ago by Denis ▴ 310
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0
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2.7k
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Comment: C: Prefetch error while downloading data from sequence read archive
4.8 years ago by Denis ▴ 310
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2
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2.7k
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Comment: C: Prefetch error while downloading data from sequence read archive
4.8 years ago by Denis ▴ 310
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0
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4.3k
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Comment: C: Aspera ascp command line utility inside prefetch call to facilitate SRA data dow
4.8 years ago by Denis ▴ 310
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1
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4.3k
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Comment: C: Aspera ascp command line utility inside prefetch call to facilitate SRA data dow
4.8 years ago by Denis ▴ 310
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1
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2.7k
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Comment: C: Freebayes variant calling understanding
4.9 years ago by Denis ▴ 310
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2
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2.7k
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Comment: C: Freebayes variant calling understanding
4.9 years ago by Denis ▴ 310
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0
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8.2k
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Comment: C: Extract SNPs flanking sequences based on VCF and genome Fasta files
5.0 years ago by Denis ▴ 310
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0
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1.8k
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Comment: C: Can I combine the GBS data with Whole Genome Resequencing for GWAS analysis
5.2 years ago by Denis ▴ 310
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1
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8.3k
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Comment: C: Making nice plots based on the different metrics from VCF file
5.2 years ago by Denis ▴ 310
1
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0
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2.7k
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Comment: C: Analysis of paired-end GBS data
updated 5.3 years ago by 5.9k • written 5.4 years ago by ▴ 310
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1
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2.0k
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Comment: C: Methods for Doing Consensus Variant Calling between multiple callers
5.4 years ago by Denis ▴ 310
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0
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1.2k
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Comment: C: Good questions and answers resources (forums) on Ecology and Statistics
5.4 years ago by Denis ▴ 310
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1
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1.2k
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Comment: C: Good questions and answers resources (forums) on Ecology and Statistics
5.4 years ago by Denis ▴ 310
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1
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4.8k
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Comment: C: Canonical Correspondence Analysis in R with Vegan library
5.5 years ago by Denis ▴ 310
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1
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6.8k
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Comment: C: Bootstrap values on the phylogenetic tree in Ape r package
5.6 years ago by Denis ▴ 310
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0
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6.0k
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Comment: C: How to Calculate FDR in permutation F test
5.6 years ago by Denis ▴ 310
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0
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6.6k
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Comment: C: Performing fast bootstrap in R using ape package
5.6 years ago by Denis ▴ 310
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1
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3.8k
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Comment: C: Calculate distance matrix from nucleotide alignment with multiple IUPAC ambiguit
5.6 years ago by Denis ▴ 310
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1
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11k
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Comment: C: DESeq2 modelling and Wald's test
5.6 years ago by Denis ▴ 310
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1
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11k
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Comment: C: DESeq2 modelling and Wald's test
5.6 years ago by Denis ▴ 310
0
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1
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2.9k
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Comment: C: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
5.7 years ago by Denis ▴ 310
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