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Comment: C: Aspera ascp command line utility inside prefetch call to facilitate SRA data dow
4.1 years ago by Denis ▴ 290
6
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6
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3.9k
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Aspera ascp command line utility inside prefetch call to facilitate SRA data downloading
genome next-gen
4.1 years ago by Denis ▴ 290
0
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1
reply
2.2k
views
Comment: C: Freebayes variant calling understanding
4.1 years ago by Denis ▴ 290
1
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2
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2.2k
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Comment: C: Freebayes variant calling understanding
4.1 years ago by Denis ▴ 290
0
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0
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7.2k
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Comment: C: Extract SNPs flanking sequences based on VCF and genome Fasta files
4.2 years ago by Denis ▴ 290
0
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0
replies
1.3k
views
RNA editing sites prediction in plant mitogenome without rna-seq data
rna editing
updated 4.3 years ago by 20 • written 7.0 years ago by ▴ 290
11
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7
replies
6.5k
views
Forum: Using Graphics Processing Units (GPUs) in bioinformatics
algorithm GPU
updated 10 months ago by 43k • written 4.7 years ago by ▴ 290
0
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0
replies
1.4k
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Comment: C: Can I combine the GBS data with Whole Genome Resequencing for GWAS analysis
4.5 years ago by Denis ▴ 290
2
votes
2
replies
560
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Frontmost snp callers for plant genomes
alignment next-gen SNP genome
updated 4.5 years ago by 13k • written 4.5 years ago by ▴ 290
1
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1
reply
7.2k
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Comment: C: Making nice plots based on the different metrics from VCF file
4.5 years ago by Denis ▴ 290
1
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0
replies
2.6k
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Comment: C: Analysis of paired-end GBS data
updated 4.5 years ago by 5.8k • written 4.7 years ago by ▴ 290
1
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1
reply
1.8k
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Comment: C: Methods for Doing Consensus Variant Calling between multiple callers
4.6 years ago by Denis ▴ 290
3
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5
replies
959
views
Good questions and answers resources (forums) on Ecology and Statistics
ecology
updated 4.7 years ago by ▴ 180 • written 4.7 years ago by ▴ 290
0
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0
replies
959
views
Comment: C: Good questions and answers resources (forums) on Ecology and Statistics
4.7 years ago by Denis ▴ 290
0
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1
reply
959
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Comment: C: Good questions and answers resources (forums) on Ecology and Statistics
4.7 years ago by Denis ▴ 290
1
vote
0
replies
936
views
Understanding of fields meaning in HapMap.hmc.txt file from UNEAK pipeline in Tassel 3.0
sequencing genome SNP
4.7 years ago by Denis ▴ 290
1
vote
1
reply
709
views
Minimal requirements for the draft genome assembly
genome assembly sequence
updated 4.7 years ago by 43k • written 4.7 years ago by ▴ 290
0
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1
reply
4.4k
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Comment: C: Canonical Correspondence Analysis in R with Vegan library
4.7 years ago by Denis ▴ 290
2
votes
3
replies
989
views
Mapping Phred+64 encoded reads with Bowtie2
genome alignment software error
updated 4.7 years ago by 20 • written 4.9 years ago by ▴ 290
2
votes
3
replies
4.4k
views
Canonical Correspondence Analysis in R with Vegan library
R
updated 4.7 years ago by 27k • written 4.7 years ago by ▴ 290
3
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0
replies
6.0k
views
Answer: A: Bootstrap values on the phylogenetic tree in Ape r package
4.8 years ago by Denis ▴ 290
7
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4
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6.0k
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Bootstrap values on the phylogenetic tree in Ape r package
R phylogenetics
4.8 years ago by Denis ▴ 290
0
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1
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6.0k
views
Comment: C: Bootstrap values on the phylogenetic tree in Ape r package
4.8 years ago by Denis ▴ 290
0
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0
replies
5.4k
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Comment: C: How to Calculate FDR in permutation F test
4.8 years ago by Denis ▴ 290
0
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0
replies
6.2k
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Comment: C: Performing fast bootstrap in R using ape package
4.8 years ago by Denis ▴ 290
0
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1
reply
3.5k
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Comment: C: Calculate distance matrix from nucleotide alignment with multiple IUPAC ambiguit
4.8 years ago by Denis ▴ 290
0
votes
1
reply
10k
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Comment: C: DESeq2 modelling and Wald's test
4.8 years ago by Denis ▴ 290
0
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1
reply
10k
views
Comment: C: DESeq2 modelling and Wald's test
4.9 years ago by Denis ▴ 290
7
votes
3
replies
3.5k
views
Calculate distance matrix from nucleotide alignment with multiple IUPAC ambiguity characters
alignment sequence phylogenetics
updated 4.9 years ago by ▴ 150 • written 4.9 years ago by ▴ 290
0
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1
reply
2.4k
views
Comment: C: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
4.9 years ago by Denis ▴ 290
6
votes
8
replies
2.4k
views
Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
software error alignment
updated 2.2 years ago by 104k • written 4.9 years ago by ▴ 290
0
votes
1
reply
989
views
Comment: C: Mapping Phred+64 encoded reads with Bowtie2
4.9 years ago by Denis ▴ 290
0
votes
0
replies
10k
views
Comment: C: How To Split Reads For Different Flowcell Lanes In Fastq Files?
5.1 years ago by Denis ▴ 290
0
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1
reply
10k
views
Comment: C: How To Split Reads For Different Flowcell Lanes In Fastq Files?
5.1 years ago by Denis ▴ 290
0
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0
replies
23k
views
Comment: C: LD-decay in a r2 vs distance(cm) plot
5.3 years ago by Denis ▴ 290
2
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0
replies
7.9k
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Comment: C: Fast LD computation from VCF files using tomahawk
5.3 years ago by Denis ▴ 290
2
votes
0
replies
7.9k
views
Comment: C: Fast LD computation from VCF files using tomahawk
5.4 years ago by Denis ▴ 290
1
vote
1
reply
2.7k
views
Interpretation of Tassel MLM output
SNP genome GWAS
5.4 years ago by Denis ▴ 290
0
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0
replies
5.7k
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Comment: C: PLINK Haplotype blocks estimation not working
5.5 years ago by Denis ▴ 290
0
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0
replies
1.1k
views
Calculate a square matrix of r2 between all SNPs in genome during LD analysis
SNP genome R
5.5 years ago by Denis ▴ 290
0
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1
reply
23k
views
Comment: C: LD-decay in a r2 vs distance(cm) plot
5.5 years ago by Denis ▴ 290
0
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0
replies
7.0k
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Comment: C: Compute Phylogenetic Trees Using Snps Data (VCF files)
5.5 years ago by Denis ▴ 290
0
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1
reply
7.0k
views
Comment: C: Compute Phylogenetic Trees Using Snps Data (VCF files)
5.5 years ago by Denis ▴ 290
0
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1
reply
7.2k
views
Answer: A: Extract SNPs flanking sequences based on VCF and genome Fasta files
5.6 years ago by Denis ▴ 290
13
votes
13
replies
7.2k
views
6 follow
Extract SNPs flanking sequences based on VCF and genome Fasta files
snp sequence genome
updated 7 months ago by • 0 • written 5.7 years ago by ▴ 290
0
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0
replies
7.2k
views
Comment: C: Extract SNPs flanking sequences based on VCF and genome Fasta files
5.6 years ago by Denis ▴ 290
0
votes
1
reply
7.2k
views
Answer: A: Extract SNPs flanking sequences based on VCF and genome Fasta files
5.7 years ago by Denis ▴ 290
0
votes
1
reply
7.2k
views
Comment: C: Extract SNPs flanking sequences based on VCF and genome Fasta files
5.7 years ago by Denis ▴ 290
12
votes
1
reply
5.3k
views
Extract SNPs from VCFfile located in genes based on GFF file information
gene snp
updated 5.7 years ago by 16k • written 5.7 years ago by ▴ 290
6
votes
2
replies
1.7k
views
A way to verify that GFF and Fasta files make a valid pair (came from the same project version)
assembly genome
5.7 years ago by Denis ▴ 290
138 results • Page 2 of 3
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