User: Stephan

gravatar for Stephan
Stephan150
Reputation:
150
Status:
Trusted
Location:
europe
Website:
http://private
Last seen:
8 years, 1 month ago
Joined:
8 years, 5 months ago
Email:
s*****@lumc.nl

Student

Posts by Stephan

<prev • 11 results • page 1 of 2 • next >
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Comment: C: Synonymous Snps Not So Synonymous At All
... thank you for the articles ...
written 8.3 years ago by Stephan150
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Synonymous Snps Not So Synonymous At All
... I've heard that even novel human synonymous snps could even be important because of the way the codons are read and/or instability of rna folding. because of the nucleotide change some codons would be more difficult to translate. Is there someone experienced with these kind of snps? Are there any ...
prediction snp written 8.3 years ago by Stephan150 • updated 4.2 years ago by Biostar ♦♦ 20
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Comment: C: Batch Search Effect Of A Snp On Protein (Conserved) Domain
... Thanks nice article lots of tools to play with ...
written 8.3 years ago by Stephan150
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Comment: C: Batch Search Effect Of A Snp On Protein (Conserved) Domain
... I don't like programming :P , but thanks for idea ...
written 8.3 years ago by Stephan150
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Batch Search Effect Of A Snp On Protein (Conserved) Domain
... I have a list of nonsynonymous SNV's I would like to batch search them all to view if any of the variations is in an conserved domain/motif/active site. all databases I have found don't like position input / mutation position. for each variant i have chromosomal position , gene name and amino acid ...
domain annotation protein written 8.3 years ago by Stephan150 • updated 8.3 years ago by Andrea_Bio2.5k
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Answer: A: Blast2Go Save While Working
... maybe you should import you're previously made blast xml file and maybe you're dataset is so big, that you saved even before it passes 1% completion, ...
written 8.4 years ago by Stephan150 • updated 8.4 years ago by Eric Normandeau10k
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Comment: C: How Many Mutations In Wtss
... ohw, it's skin cancer btw ...
written 8.4 years ago by Stephan150
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Comment: C: How Many Mutations In Wtss
... Thanks, nice catch. you're right I did not make the list on my own, but we are all first timers here at my department with RNA seq ...
written 8.4 years ago by Stephan150
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How Many Mutations In Wtss
... I'm a novel student bioinformatics and I am working on a transcriptome dataset of 4 cancer patients. I've read a lot of articles about RNA-Seq. But none of the articles explains how many mutations you typically find in Rna sequencing of humans. I have a list of 5.000 mutations that occur in all t ...
rna next-gen mutation sequencing written 8.4 years ago by Stephan150 • updated 8.3 years ago by Sheila0
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Answer: A: Open Source Sequence Assembly Programs
... I know a online tool, can take a couple of hours. And don't know your fileformat but have a look: http://egassembler.hgc.jp/ http://www.phrap.org/phredphrapconsed.html http://sourceforge.net/apps/mediawiki/amos/index.php?title=AMOS ...
written 8.4 years ago by Stephan150

Latest awards to Stephan

Appreciated 8.3 years ago, created a post with more than 5 votes. For Synonymous Snps Not So Synonymous At All
Good Question 8.3 years ago, asked a question that was upvoted at least 5 times. For Synonymous Snps Not So Synonymous At All
Student 8.3 years ago, asked a question with at least 3 up-votes. For Synonymous Snps Not So Synonymous At All
Popular Question 8.3 years ago, created a question with more than 1,000 views. For Batch Search Effect Of A Snp On Protein (Conserved) Domain

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