User: Yongjie Zhang
Yongjie Zhang • 80
- Reputation:
- 80
- Status:
- Trusted
- Location:
- UC Berkeley, USA/ Shanxi Univ, China
- Website:
- http://scholar.google....
- Last seen:
- 7 hours ago
- Joined:
- 5 years, 11 months ago
- Email:
- y***************@gmail.com
about me
Posts by Yongjie Zhang
<prev
• 53 results •
page 1 of 6 •
next >
0
votes
1
answer
414
views
1
answers
Answer:
A: MaSuRCA installation error
... Boost is not found. You have two options:
1. implement the command `BOOST_ROOT=install ./install.sh` Download and
decompress boost
(https://sourceforge.net/projects/boost/files/boost/), and then
2. implement the command like `BOOST_ROOT=/share/home/zhangyj/biosoft/boost_1_72_0 ./install.s ...
written 10 days ago by
Yongjie Zhang • 80
• updated
7 days ago by
lieven.sterck ♦ 6.9k
0
votes
0
answers
384
views
0
answers
... Dear Pierre,
Could you please give more details? ...
written 2.1 years ago by
Yongjie Zhang • 80
1
vote
2
answers
1.3k
views
5 follow
2
answers
... Hello,
I have a fasta file with many DNA sequences. I want to sort these sequence based on a designated order in a sequence name list file. How to acheive this?
Thanks.
Yongjie ...
written 2.1 years ago by
Yongjie Zhang • 80
• updated
2.1 years ago by
natallah • 10
0
votes
0
answers
384
views
0
answers
... Hello,
I have dozens of contig sequences representing mitochondral fragments of a species, and want to orient and order these sequences by refering to a reference mitochondrial genome sequence. I used to do it by hand, but do you know an easy way to do this? Any programs or scripts?
Thanks,
Yongj ...
written 2.1 years ago by
Yongjie Zhang • 80
1
vote
1
answer
625
views
1
answer
... I want to draw a base composition plot in a DNA sequence, but currently programs (e.g., http://www.ebi.ac.uk/Tools/seqstats/emboss_cpgplot/) only plot GC contents. Did you know how to plot AT contents across a DNA sequence? ...
written 2.7 years ago by
Yongjie Zhang • 80
• updated
18 months ago by
Biostar ♦♦ 20
0
votes
1
answer
1.1k
views
1
answers
... Thanks for your answer, but my question seems not be solved. I hope to input a DNA sequence (as templates) and some primer pairs. Then,the tool can generate a virtual electrophoretic gel image, where each lane correpsonds to the amplification result of a primer pair. ...
written 3.6 years ago by
Yongjie Zhang • 80
0
votes
0
answers
700
views
0
answers
... Hello,
I want to extract mitochondrial DNA from a fungus, but there are two ways to cultivate the fungus, one is to cultivate it on an agar medium (covering a piece of cellophane paper to stop hyphae to grow into the medium) in a petri dish, and the other is to cultivate it in a liquid medium in an ...
written 3.6 years ago by
Yongjie Zhang • 80
0
votes
1
answer
1.1k
views
1
answer
... Hello,
I want to display a virtual electrophoresis map based on a DNA template (i.e. a long DNA sequence) and some primer pairs. I do not want to do PCR experiment and run a real gel. Do you know if there is a tool to help me?
Thanks for any comments.
Yongjie
...
written 3.6 years ago by
Yongjie Zhang • 80
• updated
19 months ago by
Biostar ♦♦ 20
0
votes
1
answer
1.5k
views
1
answers
... Thank you, dariober.
I noticed that some literature considered a gene was expressed if RPKM > 0.2. Do you think if such a threshold value (0.2) widely recognized in the community? In my case, RPKM for some mitochondrial genes will be lower than 0.2 if I use the whole reads instead of only mitocho ...
written 3.6 years ago by
Yongjie Zhang • 80
0
votes
1
answer
1.5k
views
1
answer
... Hello,
I performed RNA-seq for a sample and want to calculate RPKM values. But I have two questions for your help.
1) Since paired-end Illumina sequencing was performed, can I use either single reads or fragments (i.e. paired reads) to calculate RPKM?
2) Let's suppose the total numbers of clean r ...
written 3.6 years ago by
Yongjie Zhang • 80
• updated
3.6 years ago by
dariober ♦ 11k
Latest awards to Yongjie Zhang
Popular Question
13 months ago,
created a question with more than 1,000 views.
For How to perform neutrality test and how to understand its output
Popular Question
13 months ago,
created a question with more than 1,000 views.
For How to eliminate chromosome name and show different colors for different genes when drawing circular maps by Circos
Popular Question
13 months ago,
created a question with more than 1,000 views.
For How to test if two phylogenies are statistically consistent
Popular Question
13 months ago,
created a question with more than 1,000 views.
For Building a tree for binary data
Popular Question
13 months ago,
created a question with more than 1,000 views.
For How to blast against published transcriptome data
Popular Question
20 months ago,
created a question with more than 1,000 views.
For How to eliminate chromosome name and show different colors for different genes when drawing circular maps by Circos
Popular Question
20 months ago,
created a question with more than 1,000 views.
For Building a tree for binary data
Popular Question
20 months ago,
created a question with more than 1,000 views.
For Programs for drawing a circular mitochondrial map, Circos or others?
Popular Question
20 months ago,
created a question with more than 1,000 views.
For How to blast against published transcriptome data
Popular Question
2.1 years ago,
created a question with more than 1,000 views.
For Building a tree for binary data
Popular Question
2.1 years ago,
created a question with more than 1,000 views.
For Programs for drawing a circular mitochondrial map, Circos or others?
Popular Question
2.1 years ago,
created a question with more than 1,000 views.
For How to blast against published transcriptome data
Great Question
2.7 years ago,
created a question with more than 5,000 views.
For Joining Paired-End Illumina Raw Reads
Popular Question
2.7 years ago,
created a question with more than 1,000 views.
For Building a tree for binary data
Popular Question
2.7 years ago,
created a question with more than 1,000 views.
For Programs for drawing a circular mitochondrial map, Circos or others?
Popular Question
2.7 years ago,
created a question with more than 1,000 views.
For How to blast against published transcriptome data
Popular Question
2.9 years ago,
created a question with more than 1,000 views.
For Building a tree for binary data
Popular Question
3.3 years ago,
created a question with more than 1,000 views.
For Building a tree for binary data
Popular Question
3.4 years ago,
created a question with more than 1,000 views.
For Building a tree for binary data
Popular Question
3.6 years ago,
created a question with more than 1,000 views.
For Joining Paired-End Illumina Raw Reads
Popular Question
3.8 years ago,
created a question with more than 1,000 views.
For About Outgroups In Phylogenetic Analysis
Popular Question
4.3 years ago,
created a question with more than 1,000 views.
For About Outgroups In Phylogenetic Analysis
Popular Question
5.4 years ago,
created a question with more than 1,000 views.
For Joining Paired-End Illumina Raw Reads
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1428 users visited in the last hour