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Posts by rodche
... Hi, Try the following cool java tool for BioPAX, Paxtools, which is also partially based on Ozgun's biopax-pattern module and can be run from console (terminal). First, go grab the latest, just updated, (it's paxtools-4.3.1-beta-no-jena.jar) executable paxtools JAR from the BioPAX project, paxtool ...
Answer: A: Reactome Clarification
... Not a complete answer, just a brief comment. That was a bug in the Reactome BioPAX export script (there should be more Catalysis instances; they're fixing now, and next release v48 won't have the issue). Keep in ming, most of URIs (RDF IDs) in the Reactome BioPAX (both - batch in the download and ...
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