User: rodche

gravatar for rodche
rodche60
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60
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New User
Location:
United States
Last seen:
4 years, 8 months ago
Joined:
5 years, 7 months ago
Email:
r*****@gmail.com

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Posts by rodche

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3
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Answer: A: How to extract protein interactions from a reactome biopax file?
... Hi, Try the following cool java tool for BioPAX, Paxtools, which is also partially based on Ozgun's biopax-pattern module and can be run from console (terminal). First, go grab the latest, just updated, (it's paxtools-4.3.1-beta-no-jena.jar) executable paxtools JAR from the BioPAX project, paxtool ...
written 4.7 years ago by rodche60
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5
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Answer: A: Reactome Clarification
... Not a complete answer, just a brief comment. That was a bug in the Reactome BioPAX export script (there should be more Catalysis instances; they're fixing now, and next release v48 won't have the issue). Keep in ming, most of URIs (RDF IDs) in the Reactome BioPAX (both - batch in the download and ...
written 5.6 years ago by rodche60

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