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Problem with Mirdeep2 and Randfold output
mirdeep2 Randfold
7 days ago by otieno43 ▴ 30
1
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0
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368
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Answer: Answer: Problem with Mirdeep2 and Randfold output
7 days ago by otieno43 ▴ 30
0
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0
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428
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Comment: Comment: UMI_extract for paired end reads of micro_RNA
6 weeks ago by otieno43 ▴ 30
1
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5
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428
views
UMI_extract for paired end reads of micro_RNA
UMI-tools UMI miRNA
updated 6 weeks ago by 82k • written 6 weeks ago by ▴ 30
0
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1
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428
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Comment: Comment: UMI_extract for paired end reads of micro_RNA
6 weeks ago by otieno43 ▴ 30
0
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1
reply
237
views
How to use topGO tool for enrichment analysis of non-model organisms
topGO
updated 10 weeks ago by ★ 1.9k • written 10 weeks ago by ▴ 30
0
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0
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237
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Problem with mirdeep2: The mapped reference id from refdb.arf is not an id of the genome fasta file
mirdeep2
updated 3 months ago by 43k • written 3 months ago by ▴ 30
0
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3
replies
561
views
Extracting list of identical items from several excel files
from excel items Extract file
updated 5 months ago by • 0 • written 5 months ago by ▴ 30
0
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0
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253
views
How to deal with mirdeep2 output "miRBase miRNAs not detected by miRDeep2"
miRNAs miRBase
5 months ago by otieno43 ▴ 30
0
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0
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555
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Comment: Comment: How to use awk and grep -v option to exclude several patterns from several lines
5 months ago by otieno43 ▴ 30
2
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2
replies
555
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How to use awk and grep -v option to exclude several patterns from several lines
AWK GREP
updated 5 months ago by 11k • written 5 months ago by ▴ 30
0
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1
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1.0k
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Comment: Comment: Alignment of mirna on specific organism data from mirbase
6 months ago by otieno43 ▴ 30
0
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9
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1.0k
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Alignment of mirna on specific organism data from mirbase
mirbase miRNA
updated 6 months ago by 161k • written 6 months ago by ▴ 30
0
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1
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481
views
How to obtain unmapped reads from the paired end samples using hisat2
fastq hisat2
updated 13 months ago by 43k • written 15 months ago by ▴ 30
0
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1
reply
694
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Minimum number of UMI counts/cell
scRNAseq
updated 16 months ago by 82k • written 16 months ago by ▴ 30
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0
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1.5k
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Comment: Comment: How to obtain a data frame from "SeuratObject".
16 months ago by otieno43 ▴ 30
0
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2
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1.5k
views
How to obtain a data frame from "SeuratObject".
Count matrix
16 months ago by otieno43 ▴ 30
0
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0
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1.1k
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Comment: Comment: STAR alignment and HTseq-count
16 months ago by otieno43 ▴ 30
0
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2
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1.1k
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STAR alignment and HTseq-count
and alignment HTseq-count STAR
16 months ago by otieno43 ▴ 30
0
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1
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1.8k
views
Comment: Comment: How to use RSEM to quantify genes and transcript expression from STAR outpute fi
20 months ago by otieno43 ▴ 30
0
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1
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1.8k
views
Comment: Comment: How to use RSEM to quantify genes and transcript expression from STAR outpute fi
updated 20 months ago by 43k • written 20 months ago by ▴ 30
1
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4
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1.8k
views
How to use RSEM to quantify genes and transcript expression from STAR outpute file (Aligned.toTranscriptome.out.bam)
RSEM STAR
updated 20 months ago by 43k • written 20 months ago by ▴ 30
1
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3
replies
873
views
How to improve alignment of scRNA-seq data in using CellRanger
scRNAseq
updated 21 months ago by ★ 5.8k • written 21 months ago by ▴ 30
0
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0
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873
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Comment: Comment: How to improve alignment of scRNA-seq data in using CellRanger
21 months ago by otieno43 ▴ 30
0
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0
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566
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Comment: Comment: How solve solve error associated with cell clustering: quickCluster
21 months ago by otieno43 ▴ 30
0
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2
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566
views
How solve solve error associated with cell clustering: quickCluster
scRNAseq
21 months ago by otieno43 ▴ 30
0
votes
1
reply
940
views
calculateQCMetrics defunct, how to calculate the quality metrics by perCellQCMetrics
scRNAseq
updated 21 months ago by ★ 1.6k • written 21 months ago by ▴ 30
0
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0
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850
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Comment: Comment: Use of Scater for QC in scRNA-seq Analysis: How to remove cells with less than c
22 months ago by otieno43 ▴ 30
2
votes
2
replies
850
views
Use of Scater for QC in scRNA-seq Analysis: How to remove cells with less than certain number of genes supported with certain number of reads
SingleCellExperiment
22 months ago by otieno43 ▴ 30
0
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0
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2.3k
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Comment: Comment: Extract transcript fasta sequences using gtf
23 months ago by otieno43 ▴ 30
0
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1
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2.3k
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Comment: Comment: Extract transcript fasta sequences using gtf
23 months ago by otieno43 ▴ 30
2
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5
replies
2.3k
views
Extract transcript fasta sequences using gtf
transcript using fasta gtf sequences
updated 23 months ago by 13k • written 23 months ago by ▴ 30
3
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2
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2.7k
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Where and How to find TruSeq Universal Adapter file: TruSeq3-PE.fa
Trimmomatic adapters Trimming using
2.2 years ago by otieno43 ▴ 30
0
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0
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2.7k
views
Comment: Comment: Where and How to find TruSeq Universal Adapter file: TruSeq3-PE.fa
2.2 years ago by otieno43 ▴ 30
0
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1
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1.5k
views
Comment: Comment: Error in executing STAR Aligner
2.2 years ago by otieno43 ▴ 30
0
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1
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1.5k
views
Comment: Comment: Error in executing STAR Aligner
2.2 years ago by otieno43 ▴ 30
0
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5
replies
1.5k
views
Error in executing STAR Aligner
Exit code 102
updated 2.2 years ago by 22k • written 2.2 years ago by ▴ 30
37 results • Page 1 of 1
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