User: Bioaln

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Bioaln340
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340
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France
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1 year, 3 months ago
Joined:
5 years, 10 months ago
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about me

Posts by Bioaln

<prev • 116 results • page 2 of 12 • next >
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Joining a consortium
... Hello all. I've been recently thinking of applying for work in a large consortium. As I have zero experience with such situations, I would be grateful for your thoughts on my approach. I planned to propose an extension of one of the main databases the consortium develops, based on my published res ...
meta consortium written 19 months ago by Bioaln340
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Trying to reproduce a GWAS analysis
... Hello. I've been recently trying to reproduce the datasets from this study: https://pbs.twimg.com/media/DcSd4svU8AAQnC7.jpg:large I was wondering, are the datasets accessible in learning-ready form, as used in this paper(poster)? So, how does one obtain GWAS data in form matrix_of_SNP and matrix_ ...
gwas machine-learning regression written 19 months ago by Bioaln340
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Comment: C: The fastest protein sequence aligner available
... Thanks, MAFFT seems promising! ...
written 20 months ago by Bioaln340
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Comment: C: The fastest protein sequence aligner available
... Why not? It works by protein sequence alignment, does it not? ...
written 20 months ago by Bioaln340
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The fastest protein sequence aligner available
... Hello all, I've been recently working with sequence alignment of proteins. I was wondering (I am still new to this field), what is the current state-of-the-art in protein sequence alignment? Which are some of the fastest protein-protein alignment algorithms, faster than blastp? Thank! ...
sequence alignment protein written 20 months ago by Bioaln340 • updated 20 months ago by lakhujanivijay4.7k
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Answer: A: Identify Transcription factor from a list of genes
... https://www.ncbi.nlm.nih.gov/pubmed/20211142, here ...
written 2.2 years ago by Bioaln340
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Comment: C: UniProt ID mapping API call
... Please refer to the accepted answer as to why this is not the optimal solution (my question is actually the python code from the proposed link). ...
written 2.3 years ago by Bioaln340
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Comment: C: UniProt ID mapping API call
... Thanks for the explanation! Keep up the good work! ...
written 2.3 years ago by Bioaln340
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Comment: C: UniProt ID mapping API call
... Thanks, this is a nifty workaround, yet I do not understand why they do not offer simple API calls for this. Time to build a conversion API webserver? ...
written 2.3 years ago by Bioaln340
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Comment: C: UniProt ID mapping API call
... Yes, I am aware of the raw files. So you are saying the only way is to parse whole UniProt, instead of calling the API on the level of a single case? This doesn't seem right - the API seems to be capable of returning e.g. json, which should work.. Your example does not work for e.g. gene IDs, does ...
written 2.3 years ago by Bioaln340

Latest awards to Bioaln

Popular Question 17 months ago, created a question with more than 1,000 views. For Aligning miRNA sequences
Popular Question 17 months ago, created a question with more than 1,000 views. For Downloading multiple PDB sequences
Popular Question 19 months ago, created a question with more than 1,000 views. For Aligning miRNA sequences
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Aligning miRNA sequences
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Downloading multiple PDB sequences
Popular Question 2.2 years ago, created a question with more than 1,000 views. For Calling muscle as a Java process
Centurion 2.2 years ago, created 100 posts.
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Downloading multiple PDB sequences
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Getting gene sequence from ncbi BioJava
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Getting gene sequence from ncbi BioJava
Popular Question 3.5 years ago, created a question with more than 1,000 views. For Pairwise sequence alignment with Biojava?
Appreciated 3.9 years ago, created a post with more than 5 votes. For A: How do you cite a tool that doesn't have a publication?
Good Answer 3.9 years ago, created an answer that was upvoted at least 5 times. For A: How do you cite a tool that doesn't have a publication?
Scholar 4.0 years ago, created an answer that has been accepted. For A: How do you cite a tool that doesn't have a publication?
Teacher 4.0 years ago, created an answer with at least 3 up-votes. For A: How do you cite a tool that doesn't have a publication?
Popular Question 4.2 years ago, created a question with more than 1,000 views. For Pairwise sequence alignment with Biojava?

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