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Are the top 50 features in heat map for each phenotype in dataset generated by GSEA called differentially expressed genes?
GSEA EdgeR Heatmap DEGs
23 months ago by TM ▴ 20
0
votes
5
replies
834
views
EdgeR, Please help me review my R script in glm approach
EdgeR DEGs
2.1 years ago by TM ▴ 20
4
votes
9
replies
1.1k
views
EdgeR, a few DEGs found between group comparison, Can I go to further downstream analysis like heat map, GSEA, GO-BP and KEGG with these few DEGs?
EdgeR DEGs
2.1 years ago by TM ▴ 20
0
votes
4
replies
862
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EdgeR, How to remove non-coding RNA before DEG analysis?
EdgeR DEGs
updated 2.1 years ago by 82k • written 2.1 years ago by ▴ 20
2
votes
2
replies
581
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EdgeR, only 1 DEG between 2 groups, Is it necessary to remove non-coding RNA before DEG analysis?
EdgeR DEGs
2.1 years ago by TM ▴ 20
0
votes
1
reply
476
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HT-seq, No feature, Alignment not unique Output
No feature HTSeq read
updated 2.1 years ago by ▴ 140 • written 2.1 years ago by ▴ 20
0
votes
9
replies
2.4k
views
Edge R, Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows: 60649, 0
EdgeR DEGs
updated 2.1 years ago by 43k • written 2.1 years ago by ▴ 20
0
votes
6
replies
880
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HT-Seq, Gene ID appeared in Gene Name row
RNA-seq output Counting table HT-seq
updated 2.1 years ago by 100k • written 2.1 years ago by ▴ 20
0
votes
2
replies
625
views
edgeR, how to write the model matrix for comparison?
EdgeR
2.1 years ago by TM ▴ 20
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