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questions
0
votes
8
replies
524
views
Speeding up WGS analysis
WGS
updated 9 weeks ago by
GenoMax
141k • written 9 weeks ago by
Trivas
★ 1.7k
1
vote
1
reply
492
views
Best practice for normalizing sequencing depth for differential miRNA expression?
DESeq2
miRge3
normalization
miRNA
updated 10 months ago by
biofalconch
★ 1.1k • written 10 months ago by
Trivas
★ 1.7k
1
vote
5
replies
994
views
What's the absolute easiest way of visualizing stranded RNA-seq data on custom genomes?
gviz
RNAseq
stranded
R
updated 14 months ago by
swbarnes2
14k • written 14 months ago by
Trivas
★ 1.7k
3
votes
3
replies
1.4k
views
Adding lfcShrink to DESeq2 analysis
DGE
DESeq2
lfcShrink
updated 16 months ago by
ATpoint
82k • written 16 months ago by
Trivas
★ 1.7k
4
votes
6
replies
1.2k
views
Get transcription factor motif from list of gene symbols
motif
factor
R
transcription
updated 18 months ago by
Matthias Zepper
4.5k • written 18 months ago by
Trivas
★ 1.7k
0
votes
1
reply
566
views
Best way to make a PCA plot integrating in-house data with public data?
tximport
SRA
RNA-seq
plot
PCA
updated 20 months ago by
Hamid Ghaedi
3.2k • written 20 months ago by
Trivas
★ 1.7k
0
votes
0
replies
461
views
Subsetting txdb object by "tx_name"
GRanges
R
Gviz
22 months ago by
Trivas
★ 1.7k
2
votes
1
reply
700
views
What are the best options for Isoform Switching Analysis in R?
splicing
alternative
isoform
RNA-seq
R
updated 23 months ago by
ATpoint
82k • written 23 months ago by
Trivas
★ 1.7k
2
votes
2
replies
688
views
Error demultiplexing with Picard
extractilluminabarcodes
demultiplex
picard
updated 2.0 years ago by
GenoMax
141k • written 2.0 years ago by
Trivas
★ 1.7k
0
votes
0
replies
611
views
Low transcript quantification with Salmon using GRCm39 annotations
RNA-seq
mouse
salmon
star
2.1 years ago by
Trivas
★ 1.7k
10 results • Page
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