User: fusion.slope

gravatar for fusion.slope
fusion.slope240
Reputation:
240
Status:
Trusted
Location:
Twitter:
tommiandreani
Last seen:
4 months ago
Joined:
6 years, 6 months ago
Email:
a*****************@gmail.com

about me

Posts by fusion.slope

<prev • 104 results • page 1 of 11 • next >
0
votes
0
answers
192
views
0
answers
IgBlast incorrect output for Light Chain
... Hello I am trying to reconstruct the heavy chain and the light chain from two DNA sequences. I run for both purposes the command provided by IgBlastn: database="my_path/to/db/" optional_file="my_path/to/optional_file/" igblastn -germline_db_V $database/human_igh_v -germ ...
igblast lightchain heavychain written 4 months ago by fusion.slope240 • updated 3 months ago by Biostar ♦♦ 20
0
votes
1
answer
627
views
1
answers
Comment: C: create null sequences with gkmSVM for mouse genome mm10
... awesome! now null sequences model also for the mouse genome! ...
written 5 months ago by fusion.slope240
0
votes
0
answers
158
views
0
answers
Differences between IMGT/V-QUEST and IgBlast
... Hello, I am wondering if any of you here in the community knows the main differences between IgBlast and IMGT/V-QUEST. From what I can see both of them can input a fasta sequence and return possile V genes J genes together with a potential D regions in the form of fasta sequence during B-cell re ...
bcr igblast written 5 months ago by fusion.slope240
0
votes
1
answer
184
views
1
answers
Comment: C: Conservation of Human and Mouse DNA sequences
... What i am doing i am lifting the coordinates of mouse to human as also the coordinates of human to mouse. Then on the lifted coordinates i calculate the conservation score using phasCons in UCSC table browser. I simulate also a set of sequences with similar GC content, size and nucleotide compositio ...
written 9 months ago by fusion.slope240
0
votes
1
answer
184
views
1
answers
Comment: C: Conservation of Human and Mouse DNA sequences
... do you think it is enough? ...
written 9 months ago by fusion.slope240
3
votes
1
answer
184
views
1
answer
Conservation of Human and Mouse DNA sequences
... Hello, i have a list of DNA regions from mouse ESCs and I would like to know if these sequences are conserved also in Human. How can I do this? ...
comparative genomic conserved dna regions written 9 months ago by fusion.slope240 • updated 9 months ago by JC11k
0
votes
0
answers
169
views
0
answers
Annotation LINE1 structure
... Hello, where can I find the annotation of the structure of each LINE1 element? I know that in repeatmasker is possible to find all the classes of transposons and retrotransposons and respective coordinates. But what about the annotation of their structure for each one? Like for example: for a put ...
annotation line1 written 9 months ago by fusion.slope240 • updated 7 months ago by Biostar ♦♦ 20
0
votes
1
answer
290
views
1
answers
Comment: C: Structural variation of cancer cell lines
... awesome Kevin, Just in time for my revision then :) Thanks a lot ...
written 11 months ago by fusion.slope240
4
votes
1
answer
290
views
1
answer
Structural variation of cancer cell lines
... Hello, I am wondering if there is a database with annotated the structural variations as also the SNPs for cancer cell lines such as K562, HepG2 and MCF-7. Any idea? Thanks in advance ...
database structuralvariation cellline written 11 months ago by fusion.slope240 • updated 11 months ago by Kevin Blighe66k
5
votes
1
answer
627
views
1
answer
create null sequences with gkmSVM for mouse genome mm10
... Hello, does anybody of you has ever tried to generate null model of DNA sequences in mouse using the gkmSVM package? It works perfectly for human but for mouse it does not. I am wondering if any of you have ever used this package for mice and had the same problem. The error problem when I use ...
R gkmsvm dna written 23 months ago by fusion.slope240 • updated 5 months ago by sarahmcclymont20

Latest awards to fusion.slope

Student 5 months ago, asked a question with at least 3 up-votes. For How to interpret and extract from a Vcf file Genotype informations as values
Popular Question 6 months ago, created a question with more than 1,000 views. For Multiple Hits and Unique Mapped Reads
Centurion 9 months ago, created 100 posts.
Popular Question 11 months ago, created a question with more than 1,000 views. For Colors UCSC genome browser
Popular Question 12 months ago, created a question with more than 1,000 views. For Colors UCSC genome browser
Popular Question 13 months ago, created a question with more than 1,000 views. For how is obtained the BED score values (the 5th column of the bed files) in BED files
Appreciated 23 months ago, created a post with more than 5 votes. For A: Where can I find public Singel Cell RNAseq data?
Popular Question 2.1 years ago, created a question with more than 1,000 views. For how is obtained the BED score values (the 5th column of the bed files) in BED files
Popular Question 2.5 years ago, created a question with more than 1,000 views. For cis-eQTL Results Visualization
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Rpkm Computation
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: Where can I find public Singel Cell RNAseq data?
Popular Question 2.9 years ago, created a question with more than 1,000 views. For cis-eQTL Results Visualization
Student 3.0 years ago, asked a question with at least 3 up-votes. For How to interpret and extract from a Vcf file Genotype informations as values
Popular Question 3.4 years ago, created a question with more than 1,000 views. For cis-eQTL Results Visualization
Popular Question 3.8 years ago, created a question with more than 1,000 views. For cis-eQTL Results Visualization
Popular Question 3.9 years ago, created a question with more than 1,000 views. For How to interpret and extract from a Vcf file Genotype informations as values
Supporter 4.0 years ago, voted at least 25 times.
Popular Question 4.4 years ago, created a question with more than 1,000 views. For How to interpret and extract from a Vcf file Genotype informations as values

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2139 users visited in the last hour