User: fusion.slope

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fusion.slope210
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Posts by fusion.slope

<prev • 101 results • page 1 of 11 • next >
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Comment: C: Conservation of Human and Mouse DNA sequences
... What i am doing i am lifting the coordinates of mouse to human as also the coordinates of human to mouse. Then on the lifted coordinates i calculate the conservation score using phasCons in UCSC table browser. I simulate also a set of sequences with similar GC content, size and nucleotide compositio ...
written 10 days ago by fusion.slope210
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Comment: C: Conservation of Human and Mouse DNA sequences
... do you think it is enough? ...
written 10 days ago by fusion.slope210
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Conservation of Human and Mouse DNA sequences
... Hello, i have a list of DNA regions from mouse ESCs and I would like to know if these sequences are conserved also in Human. How can I do this? ...
comparative genomic conserved dna regions written 10 days ago by fusion.slope210 • updated 10 days ago by JC9.3k
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Annotation LINE1 structure
... Hello, where can I find the annotation of the structure of each LINE1 element? I know that in repeatmasker is possible to find all the classes of transposons and retrotransposons and respective coordinates. But what about the annotation of their structure for each one? Like for example: for a put ...
annotation line1 written 11 days ago by fusion.slope210
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Comment: C: Structural variation of cancer cell lines
... awesome Kevin, Just in time for my revision then :) Thanks a lot ...
written 9 weeks ago by fusion.slope210
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Structural variation of cancer cell lines
... Hello, I am wondering if there is a database with annotated the structural variations as also the SNPs for cancer cell lines such as K562, HepG2 and MCF-7. Any idea? Thanks in advance ...
database structuralvariation cellline written 9 weeks ago by fusion.slope210 • updated 9 weeks ago by Kevin Blighe53k
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create null sequences with gkmSVM for mouse genome mm10
... Hello, does anybody of you has ever tried to generate null model of DNA sequences in mouse using the gkmSVM package? It works perfectly for human but for mouse it does not. I am wondering if any of you have ever used this package for mice and had the same problem. The error problem when I use ...
R gkmsvm dna written 13 months ago by fusion.slope210
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Comment: C: eQTL analysis considering P-values
... you can select cut-off threshold to work with significant SNP. The cut-off threshold should be selected according to sample size to avoid false positive results. A P.val <= 0.01 is a good start but again, select a cut off for eQTL or GWAS or QTL depends on the number of SNPs that you are testing ...
written 14 months ago by fusion.slope210
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Comment: C: eQTL analysis considering P-values
... you have a table that might be the output of a tool that is performing such eQTL or QTL analysis, so please formulate again your question. What do you want to know? ...
written 14 months ago by fusion.slope210
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Comment: C: eQTL analysis considering P-values
... make a screenshot of the dataset and I can tell you more. I am not in the condition now to download 63.3 Mb of a file. ...
written 14 months ago by fusion.slope210

Latest awards to fusion.slope

Centurion 10 days ago, created 100 posts.
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Colors UCSC genome browser
Popular Question 3 months ago, created a question with more than 1,000 views. For Colors UCSC genome browser
Popular Question 4 months ago, created a question with more than 1,000 views. For how is obtained the BED score values (the 5th column of the bed files) in BED files
Appreciated 14 months ago, created a post with more than 5 votes. For A: Where can I find public Singel Cell RNAseq data?
Popular Question 16 months ago, created a question with more than 1,000 views. For how is obtained the BED score values (the 5th column of the bed files) in BED files
Popular Question 21 months ago, created a question with more than 1,000 views. For cis-eQTL Results Visualization
Popular Question 21 months ago, created a question with more than 1,000 views. For Rpkm Computation
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: Where can I find public Singel Cell RNAseq data?
Popular Question 2.1 years ago, created a question with more than 1,000 views. For cis-eQTL Results Visualization
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Popular Question 2.7 years ago, created a question with more than 1,000 views. For cis-eQTL Results Visualization
Popular Question 3.1 years ago, created a question with more than 1,000 views. For cis-eQTL Results Visualization
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