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The best tool for Scaffolding
contigs
scaffold
assembly
spades
updated 6 weeks ago by
dthorbur
★ 2.5k • written 3 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
1.6k
views
Comment:
Comment: Interpreting phylogenetics tree
6 weeks ago by
davidmaimoun
▴ 50
11
votes
17
replies
1.6k
views
6 follow
Interpreting phylogenetics tree
phylogenetic-tree
itol
phylogenetics
updated 6 weeks ago by
Ram
44k • written 9 weeks ago by
davidmaimoun
▴ 50
0
votes
2
replies
1.6k
views
Comment:
Comment: Interpreting phylogenetics tree
7 weeks ago by
davidmaimoun
▴ 50
0
votes
0
replies
1.6k
views
Comment:
Comment: Interpreting phylogenetics tree
7 weeks ago by
davidmaimoun
▴ 50
0
votes
2
replies
1.6k
views
Comment:
Comment: Interpreting phylogenetics tree
7 weeks ago by
davidmaimoun
▴ 50
0
votes
0
replies
1.6k
views
Comment:
Comment: Interpreting phylogenetics tree
8 weeks ago by
davidmaimoun
▴ 50
0
votes
2
replies
1.6k
views
Comment:
Comment: Interpreting phylogenetics tree
8 weeks ago by
davidmaimoun
▴ 50
0
votes
0
replies
1.6k
views
Comment:
Comment: Interpreting phylogenetics tree
8 weeks ago by
davidmaimoun
▴ 50
0
votes
0
replies
17k
views
Comment:
Comment: Generating consensus sequence from bam file
3 months ago by
davidmaimoun
▴ 50
0
votes
1
reply
17k
views
Comment:
Comment: Generating consensus sequence from bam file
3 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
169
views
Cannot Align My Consensus fasta
bcftools
consensus
alignment
variant-calling
updated 3 months ago by
Ram
44k • written 3 months ago by
davidmaimoun
▴ 50
0
votes
1
reply
17k
views
Comment:
Comment: Generating consensus sequence from bam file
3 months ago by
davidmaimoun
▴ 50
4
votes
7
replies
1.4k
views
COBS Indexing genomes - understand the output
indexing
cobs
genomes
COBS
updated 3 months ago by
Jianshu_Zhao
• 0 • written 2.4 years ago by
davidmaimoun
▴ 50
0
votes
0
replies
329
views
Comment:
Comment: Minimum Spanning Tree for SNPs
4 months ago by
davidmaimoun
▴ 50
0
votes
2
replies
329
views
Minimum Spanning Tree for SNPs
mst
matrix
snp
distance
bowtie2
4 months ago by
davidmaimoun
▴ 50
3
votes
4
replies
578
views
QC Analysis from Sanger sequencing
qc
ab1
sanger
5 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
578
views
Comment:
Comment: QC Analysis from Sanger sequencing
5 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
578
views
Comment:
Comment: QC Analysis from Sanger sequencing
5 months ago by
davidmaimoun
▴ 50
2
votes
8
replies
891
views
Blastn for all bacteria genomes; create the db
blast
blastn
updated 9 months ago by
GenoMax
147k • written 9 months ago by
davidmaimoun
▴ 50
0
votes
1
reply
891
views
Comment:
Comment: Blastn for all bacteria genomes; create the db
9 months ago by
davidmaimoun
▴ 50
0
votes
1
reply
891
views
Comment:
Comment: Blastn for all bacteria genomes; create the db
9 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
597
views
Comment:
Comment: Blastn - matches with another species
9 months ago by
davidmaimoun
▴ 50
0
votes
1
reply
597
views
Comment:
Comment: Blastn - matches with another species
9 months ago by
davidmaimoun
▴ 50
1
vote
4
replies
597
views
Blastn - matches with another species
blast
blastn
9 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
261
views
Shovill running error 256
shovill
updated 10 months ago by
Ram
44k • written 10 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
1.1k
views
Comment:
Comment: Parallelization of task according to the cpu capacity
10 months ago by
davidmaimoun
▴ 50
4
votes
8
replies
1.1k
views
Parallelization of task according to the cpu capacity
parallelization
cpu
10 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
1.1k
views
Comment:
Comment: Parallelization of task according to the cpu capacity
10 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
1.1k
views
Comment:
Comment: Parallelization of task according to the cpu capacity
10 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
1.1k
views
Comment:
Comment: Parallelization of task according to the cpu capacity
10 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
2.0k
views
Comment:
Comment: Docker: Pass reads file form host to container
11 months ago by
davidmaimoun
▴ 50
0
votes
1
reply
2.0k
views
Comment:
Comment: Docker: Pass reads file form host to container
11 months ago by
davidmaimoun
▴ 50
4
votes
8
replies
2.0k
views
Docker: Pass reads file form host to container
docker
11 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
2.0k
views
Comment:
Comment: Docker: Pass reads file form host to container
11 months ago by
davidmaimoun
▴ 50
3
votes
9
replies
2.8k
views
Nextflow - Wait for process ending to call the next one without output
nextflow
updated 12 months ago by
crhis
▴ 10 • written 16 months ago by
davidmaimoun
▴ 50
0
votes
4
replies
1.1k
views
Average Coverage after Assembly (Spades)
coverage
average
assembly
updated 13 months ago by
Brian Bushnell
20k • written 2.2 years ago by
davidmaimoun
▴ 50
0
votes
0
replies
583
views
Comment:
Comment: Chewbbaca - explanation of the output
15 months ago by
davidmaimoun
▴ 50
0
votes
2
replies
583
views
Chewbbaca - explanation of the output
chewbbaca
15 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
2.8k
views
Comment:
Comment: Nextflow - Wait for process ending to call the next one without output
15 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
2.8k
views
Comment:
Comment: Nextflow - Wait for process ending to call the next one without output
15 months ago by
davidmaimoun
▴ 50
0
votes
1
reply
2.8k
views
Comment:
Comment: Nextflow - Wait for process ending to call the next one without output
16 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
1.8k
views
Comment:
Comment: Find Pathogenic Variants
19 months ago by
davidmaimoun
▴ 50
3
votes
6
replies
1.8k
views
Find Pathogenic Variants
vcf
variant-calling
19 months ago by
davidmaimoun
▴ 50
0
votes
0
replies
1.8k
views
Comment:
Comment: Find Pathogenic Variants
19 months ago by
davidmaimoun
▴ 50
0
votes
1
reply
1.8k
views
Comment:
Comment: Find Pathogenic Variants
19 months ago by
davidmaimoun
▴ 50
0
votes
1
reply
1.1k
views
Comment:
Comment: Average Coverage after Assembly (Spades)
2.2 years ago by
davidmaimoun
▴ 50
0
votes
0
replies
373
views
Fetching schemes from pubMLST
Fetching
pubMLST
schemes
cgMLST
scheme
2.3 years ago by
davidmaimoun
▴ 50
16
votes
10
replies
4.8k
views
Nextflow- cannot run bash script from Docker
script
bash
nextflow
from
docker
updated 2.3 years ago by
colindaven
7.0k • written 2.3 years ago by
davidmaimoun
▴ 50
2
votes
0
replies
4.8k
views
Answer:
Answer: Nextflow- cannot run bash script from Docker
2.3 years ago by
davidmaimoun
▴ 50
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