User: yliueagle

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yliueagle220
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220
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Location:
France
Last seen:
4 months ago
Joined:
6 years, 2 months ago
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y********@googlemail.com

Posts by yliueagle

<prev • 29 results • page 2 of 3 • next >
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Why low MAF leads to low power
... For GWAS analysis, why it lacks power for SNPs with low MAF (e.g. <5%)? What's the statistics behind?   ...
maf power snp written 4.9 years ago by yliueagle220 • updated 4.9 years ago by Sam3.0k
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STRING combined score: a bug or else
... I am using the STRING protein interaction database. I have problem of how the combined score of an interaction is calculated. In this reference http://nar.oxfordjournals.org/content/33/suppl_1/D433.long, it stated the combined score S=1-(1-S_1)*...*(1-S_8), where S_i is the score from the ith eviden ...
interaction string protein written 5.0 years ago by yliueagle220
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position range of loci
... A question that how can I obtain the position range of each locus from USCS Genome browser database (assembly GRCh37/hg19)? For example the position range of locus 2q36.3 is chr2:22610000 - 231000000 ...
genome assembly written 5.2 years ago by yliueagle220 • updated 5.2 years ago by Devon Ryan95k
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functional annotation of protein network
... I've selected a candidate protein interaction network of size 80 nodes / 92 edges. The network is connected, but displays a structure of several branches. If there any tool to annotate this network, with the annotation more or less in consist with the branch structure? The annotation can be for prot ...
gene annotation interaction network protein written 5.2 years ago by yliueagle220
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DAVID: functional annotation chart result explanation
... I am using the DAVID 6.7 to do some functional annotation analysis http://david.abcc.ncifcrf.gov/ I submitted my interested gene list(human), and used the default Homo Sapiens as background.  In the annotation summary results, I viewed the 'Chart' under the Gene Ontology categories. Inside this ' ...
annotation david written 5.2 years ago by yliueagle220
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Cytoscape: display each node with two nested circles
... I am using Cytoscape 3.2.1. For each of my node, I have 2 numeric attributes A and B, with A bigger than B. For example the node represents a city; attribute A represents the whole population of the city and B represents the population of male. I want to display the node with two nested circles, the ...
cytoscape written 5.3 years ago by yliueagle220
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Comment: C: GWAS: low explained heritability
... Thanks for the explanation. This is very clear. ...
written 5.5 years ago by yliueagle220
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GWAS: low explained heritability
... In GWAS, what it means by 'single SNP association studies only explain a small part of disease heritability'? How this explained heritability is quantified? ...
gwas written 5.5 years ago by yliueagle220 • updated 5.5 years ago by Vincent Laufer1.1k
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GWAS dataset: SNPs with association p-value
... I want to download some GWAS datasets (1 will be ok), that it should contain mainly the following information: 1) the SNPs; 2) the SNP p-vlaue (by single SNP association analysis, meta-analysis, etc). My objective is to try this dataset for gene set enrichment analysis (GSEA). Any resources? ...
gwas dataset written 5.5 years ago by yliueagle220 • updated 5.5 years ago by willgilks300
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How to group genes as 'gene sets'
... I want to do some gene set enrichment analysis for Parkinson. But what are the proper ways to attribute genes into functional related groups? I know genes can be put into groups as 'pathways' or 'gene families', whether there are other ways? And which database should I refer to? Thanks. ...
gene group written 5.7 years ago by yliueagle220 • updated 5.7 years ago by EagleEye6.6k

Latest awards to yliueagle

Popular Question 9 months ago, created a question with more than 1,000 views. For Why low MAF leads to low power
Popular Question 2.0 years ago, created a question with more than 1,000 views. For Why low MAF leads to low power
Great Question 3.3 years ago, created a question with more than 5,000 views. For DAVID: functional annotation chart result explanation
Great Question 3.3 years ago, created a question with more than 5,000 views. For Map gene name to gene ID
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Why low MAF leads to low power
Popular Question 3.3 years ago, created a question with more than 1,000 views. For DAVID: functional annotation chart result explanation
Popular Question 3.3 years ago, created a question with more than 1,000 views. For GWAS dataset: SNPs with association p-value
Popular Question 3.3 years ago, created a question with more than 1,000 views. For How to group genes as 'gene sets'
Popular Question 3.7 years ago, created a question with more than 1,000 views. For DAVID: functional annotation chart result explanation
Popular Question 3.7 years ago, created a question with more than 1,000 views. For GWAS: low explained heritability
Student 3.7 years ago, asked a question with at least 3 up-votes. For Why do genes have so many synonyms?
Popular Question 4.1 years ago, created a question with more than 1,000 views. For GWAS dataset: SNPs with association p-value
Popular Question 4.1 years ago, created a question with more than 1,000 views. For Why do genes have so many synonyms?
Popular Question 4.3 years ago, created a question with more than 1,000 views. For Why do genes have so many synonyms?
Popular Question 4.3 years ago, created a question with more than 1,000 views. For GWAS dataset: SNPs with association p-value
Appreciated 4.5 years ago, created a post with more than 5 votes. For gene (or SNP) related to a disease
Good Question 4.5 years ago, asked a question that was upvoted at least 5 times. For gene (or SNP) related to a disease
Popular Question 4.5 years ago, created a question with more than 1,000 views. For Why do genes have so many synonyms?
Student 5.5 years ago, asked a question with at least 3 up-votes. For Why do genes have so many synonyms?
Good Question 5.7 years ago, asked a question that was upvoted at least 5 times. For Why do genes have so many synonyms?
Appreciated 5.7 years ago, created a post with more than 5 votes. For Why do genes have so many synonyms?
Student 5.7 years ago, asked a question with at least 3 up-votes. For Why do genes have so many synonyms?

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