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3
votes
3
replies
1.9k
views
What are the potential challegnes in non-coding transcriptome?
RNA-Seq genome
updated 2.5 years ago by 45k • written 9.7 years ago by ▴ 990
0
votes
0
replies
5.7k
views
Comment: C: How to extract peak coordinates for chip-seq bedgraph file ?
9.7 years ago by jack ▴ 990
7
votes
8
replies
5.7k
views
How to extract peak coordinates for chip-seq bedgraph file ?
ChIP-Seq RNA-Seq
updated 2.5 years ago by 45k • written 9.7 years ago by ▴ 990
0
votes
0
replies
5.7k
views
Comment: C: How to extract peak coordinates for chip-seq bedgraph file ?
9.7 years ago by jack ▴ 990
0
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1
reply
5.7k
views
Comment: C: How to extract peak coordinates for chip-seq bedgraph file ?
9.7 years ago by jack ▴ 990
0
votes
1
reply
5.7k
views
Comment: C: How to extract peak coordinates for chip-seq bedgraph file ?
9.7 years ago by jack ▴ 990
0
votes
4
replies
2.6k
views
why only small fraction of reads from control sample of chip-seq are mapping into the genome ?
ChIP-Seq
updated 2.4 years ago by 45k • written 9.8 years ago by ▴ 990
0
votes
1
reply
2.4k
views
Where to get human 3'-UTR multiple sequence alignment ?
alignment genome blast sequence
updated 2.3 years ago by 45k • written 9.8 years ago by ▴ 990
0
votes
0
replies
3.2k
views
Comment: Comment: looking for databases to download whole RNA RNA-seq data
updated 2.3 years ago by 45k • written 9.8 years ago by ▴ 990
0
votes
1
reply
3.2k
views
Comment: C: looking for databases to download whole RNA RNA-seq data
9.8 years ago by jack ▴ 990
1
vote
7
replies
3.2k
views
looking for databases to download whole RNA RNA-seq data
ChIP-Seq RNA-Seq next-gen-sequencing
updated 2.3 years ago by 45k • written 9.8 years ago by ▴ 990
0
votes
1
reply
3.2k
views
Comment: C: looking for databases to download whole RNA RNA-seq data
9.8 years ago by jack ▴ 990
1
vote
2
replies
4.2k
views
How to compute scale bar of the dendrogram for heatmap using heatmap2 ?
R
updated 2.2 years ago by 45k • written 9.9 years ago by ▴ 990
10
votes
7
replies
8.3k
views
How much paired end vs single end RNA-seq reads can have influnce on expression level quantification ?
alignment RNA-Seq next-gen-sequencing
updated 2.2 years ago by 45k • written 9.9 years ago by ▴ 990
0
votes
1
reply
8.3k
views
Comment: Comment: How much paired end vs single end RNA-seq reads can have influnce on expression
updated 2.2 years ago by 45k • written 9.9 years ago by ▴ 990
0
votes
0
replies
7.2k
views
Comment: Comment: How to interpret the result of GO analysis using Ontologizer / mapping GO IDs t
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 990
0
votes
0
replies
7.2k
views
Comment: Comment: How to interpret the result of GO analysis using Ontologizer / mapping GO IDs t
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 990
15
votes
26
replies
7.2k
views
How to interpret the result of GO analysis using Ontologizer / mapping GO IDs to GO TERMS ?
gene-ontology R RNA-Seq
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 990
0
votes
2
replies
7.2k
views
Comment: Comment: How to interpret the result of GO analysis using Ontologizer / mapping GO IDs t
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 990
0
votes
1
reply
7.2k
views
Comment: Comment: How to interpret the result of GO analysis using Ontologizer / mapping GO IDs t
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 990
0
votes
1
reply
7.2k
views
Comment: Comment: How to interpret the result of GO analysis using Ontologizer / mapping GO IDs t
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 990
0
votes
1
reply
7.2k
views
Comment: Comment: How to interpret the result of GO analysis using Ontologizer / mapping GO IDs t
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 990
0
votes
2
replies
7.2k
views
Comment: C: How to interpret the result of GO analysis using Ontologizer ?
10.2 years ago by jack ▴ 990
0
votes
2
replies
7.2k
views
Comment: Comment: How to interpret the result of GO analysis using Ontologizer / mapping GO IDs t
updated 3.4 years ago by 45k • written 10.2 years ago by ▴ 990
0
votes
0
replies
7.2k
views
Comment: Comment: How to interpret the result of GO analysis using Ontologizer / mapping GO IDs t
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 990
0
votes
1
reply
7.2k
views
Comment: Comment: How to interpret the result of GO analysis using Ontologizer / mapping GO IDs t
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 990
7
votes
9
replies
9.3k
views
How to make heatmap more bright with proper color spectrum ?
heatmap genomics R
updated 2.1 years ago by 45k • written 10.2 years ago by ▴ 990
0
votes
0
replies
9.3k
views
Comment: Comment: How to make heatmap more bright with proper color spectrum ?
updated 3.0 years ago by 45k • written 10.2 years ago by ▴ 990
0
votes
0
replies
9.3k
views
Comment: C: How to make heatmap more bright with proper color spectrum ?
10.2 years ago by jack ▴ 990
0
votes
1
reply
9.3k
views
Comment: C: How to make heatmap more bright with proper color spectrum ?
10.2 years ago by jack ▴ 990
3
votes
2
replies
5.8k
views
what is the best gene ontology enrichment analysis package to include the pipeline
ontology genome RNA-Seq R
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 990
0
votes
0
replies
3.0k
views
Comment: Comment: what the best gene set enrichment analysis online tool for computing enrichement
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 990
1
vote
2
replies
3.0k
views
what the best gene set enrichment analysis online tool for computing enrichement p-values ?
genome RNA-Seq R
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 990
0
votes
1
reply
5.6k
views
Comment: C: what is the best p value cuttoff to select differentially expressed genes ?
10.3 years ago by jack ▴ 990
2
votes
3
replies
5.6k
views
what is the best p value cuttoff to select differentially expressed genes ?
sequencing genomics software-error RNA-Seq
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 990
1
vote
3
replies
4.2k
views
Looking for breast cancer genes databases
genomics cancer
updated 2.9 years ago by 45k • written 10.3 years ago by ▴ 990
0
votes
1
reply
2.0k
views
How to create Gene_transcript association matrix with genome version hg19?
Assembly genome alignment R RNA-Seq
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 990
1
vote
0
replies
45k
views
Comment: C: what is the difference between GRCh37 and hg19 ?
10.3 years ago by jack ▴ 990
0
votes
0
replies
45k
views
Comment: Comment: what is the difference between GRCh37 and hg19 ?
updated 3.1 years ago by 45k • written 10.3 years ago by ▴ 990
0
votes
1
reply
1.6k
views
Comment: Comment: How to deal with multiple to one matching of ids ?
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 990
0
votes
1
reply
1.6k
views
Comment: C: How to deal with multiple to one matching of ids ?
10.4 years ago by jack ▴ 990
6
votes
7
replies
1.6k
views
How to deal with multiple to one matching of ids ?
genomics genome RNA-Seq
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 990
1
vote
0
replies
1.6k
views
Comment: C: How to deal with multiple to one matching of ids ?
10.4 years ago by jack ▴ 990
1
vote
1
reply
2.5k
views
How to create transcript-gene association matrix using Refseq IDs ?
gene next-gen RNA-Seq R
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 990
0
votes
3
replies
4.8k
views
How to visualize the similarity between transcriptome expression in different conditions in one heatmap ?
next-gen RNA-Seq R
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 990
0
votes
1
reply
20k
views
Comment: C: What is the simple way to remove known batch effect from RNA-seq data ?
10.4 years ago by jack ▴ 990
23
votes
6
replies
20k
views
What is the simple way to remove known batch effect from RNA-seq data ?
next-gen genomics R software-error RNA-Seq
updated 3.2 years ago by 45k • written 10.4 years ago by ▴ 990
0
votes
1
reply
4.5k
views
Comment: Comment: How to test the quality of RNA-seq gene expression data ?
updated 4.0 years ago by 45k • written 10.5 years ago by ▴ 990
1
vote
3
replies
4.8k
views
How can I know forwards reads are sense or anti-sense reads in paired end sequencing ?
software alignment error Assembly RNA-Seq
updated 4.0 years ago by 45k • written 10.5 years ago by ▴ 990
10
votes
6
replies
4.5k
views
How to test the quality of RNA-seq gene expression data ?
quantification sequencing RNA-Seq genome
updated 4.0 years ago by 45k • written 10.5 years ago by ▴ 990
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