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6
votes
7
replies
1.3k
views
How to deal with multiple to one matching of ids ?
genomics genome RNA-Seq
updated 2.2 years ago by 43k • written 9.4 years ago by ▴ 960
1
vote
1
reply
2.3k
views
How to create transcript-gene association matrix using Refseq IDs ?
gene next-gen RNA-Seq R
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 960
0
votes
3
replies
4.5k
views
How to visualize the similarity between transcriptome expression in different conditions in one heatmap ?
next-gen RNA-Seq R
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 960
23
votes
6
replies
20k
views
What is the simple way to remove known batch effect from RNA-seq data ?
next-gen genomics R software-error RNA-Seq
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 960
1
vote
3
replies
4.5k
views
How can I know forwards reads are sense or anti-sense reads in paired end sequencing ?
software alignment error Assembly RNA-Seq
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 960
10
votes
6
replies
4.2k
views
How to test the quality of RNA-seq gene expression data ?
quantification sequencing RNA-Seq genome
updated 3.1 years ago by 43k • written 9.5 years ago by ▴ 960
2
votes
3
replies
2.0k
views
How to interpate information of fastq formate read files ?
RNA-Seq alignment fasta Assembly
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 960
6
votes
2
replies
15k
views
How to download Gene annotations.gtf file for Drosophila melanogaster
genomics alignment RNA-Seq next-gen
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 960
0
votes
1
reply
2.4k
views
What are the suitable packages for GO and GSEA to put inside of pipeline ?
RNA-Seq genome software-error R
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 960
6
votes
7
replies
9.3k
views
How much of human genome transcribe? How much of transcriptome are non-coding RNAs?
next-gen genomics RNA-Seq
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 960
7
votes
3
replies
4.3k
views
Looking databases for experimentaly validated miRNA-target interaction
next-gen genome RNA-Seq Assembly
updated 2.3 years ago by 43k • written 9.7 years ago by ▴ 960
3
votes
4
replies
4.1k
views
Looking for database to download transcriptome annotation file
next-gen sequence R RNA-Seq
updated 2.4 years ago by 43k • written 9.7 years ago by ▴ 960
2
votes
2
replies
1.9k
views
Comprehensive database for RNA-seq transcriptome sequencing ?
sequencing RNA-Seq
updated 2.4 years ago by 43k • written 9.7 years ago by ▴ 960
2
votes
3
replies
2.7k
views
Whay ranking count data lead to uniform distribution of the features ?
RNA-Seq R rna-seq next-gen sequencing
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 960
3
votes
3
replies
1.9k
views
What are the possible dangers of using inside sample and between samples normalization exchangeably?
next-gen R genome RNA-Seq
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 960
6
votes
4
replies
3.2k
views
Does tools for removing batch effect from microarray data work for RNA-seq data as well ?
next-gen R RNA-Seq
updated 2.4 years ago by 43k • written 9.8 years ago by ▴ 960
9
votes
10
replies
7.0k
views
How to normalize RPKM values to use in regression models ?
count-data rpkm RNA-Seq regression transformation
updated 2.3 years ago by 43k • written 9.8 years ago by ▴ 960
5
votes
4
replies
2.6k
views
Why number of reads in a sample that are assigned to gene i can be modeled by a negative bionomial distribution ?
next-gen RNA-Seq Assembly
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 960
6
votes
1
reply
3.0k
views
What is the shot noise in NGS?
RNA-Seq next-gen
updated 2.5 years ago by 43k • written 9.8 years ago by ▴ 960
1
vote
1
reply
1.9k
views
Looking review paper about; From mapping NGS reads to quantification of gene expression
next-gen sequence alignment RNA-Seq
updated 2.5 years ago by 43k • written 9.9 years ago by ▴ 960
51
votes
20
replies
13k
views
15 follow
What is the best programming language for NGS data analysis pipeline development?
RNA-Seq Assembly
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 960
3
votes
0
replies
3.1k
views
How miRNA sequencing works by Illumina GA ?
RNA-Seq sequence sequencing next-gen
updated 2.6 years ago by 43k • written 9.9 years ago by ▴ 960
7
votes
11
replies
2.7k
views
Is the expression value of miRNA precursore is equivalent to it's corresponding mature miRNA form ?
RNA-Seq TCGA mirna next-gen
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 960
19
votes
7
replies
10k
views
How to identify Gene IDs ?
R ID
updated 2.3 years ago by 43k • written 10.0 years ago by ▴ 960
4
votes
10
replies
4.0k
views
Statistical tests for sanity check of expression data before inferring network
sequencing genome
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 960
5
votes
1
reply
2.3k
views
Is it good idea to use two different quatification methods from TCGA at same time ?
tcga RNA-Seq next-gen
updated 2.6 years ago by 43k • written 10.0 years ago by ▴ 960
76 results • Page 2 of 2
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