Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
answers
0
votes
1
reply
472
views
Answer:
Answer: Consensus peaksets in DiffBind - conceptual questinos
4 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
787
views
Answer:
Answer: Multi-factor designs in DiffBind
4 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
321
views
Answer:
Answer: CHIPSEQ Analysis , DiffBind Parameters
4 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
486
views
Answer:
Answer: Diffbind low p-value but high FDR
5 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
701
views
Answer:
Answer: The bam file used for DiffBind?
9 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
596
views
Answer:
Answer: How to compare peak profiles for a subset of ChIPseq genes
9 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
4.9k
views
Answer:
Answer: Help with DiffBind Generating report-based DBA object... Error: No valid contras
9 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
809
views
Answer:
Answer: How to interpret chipseq profile plot
10 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
485
views
Answer:
Answer: Profile Plot looks strange
10 months ago by
Rory Stark
★ 2.0k
2
votes
0
replies
769
views
Answer:
Answer: Sample sheet file for DiffBind
10 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
2.5k
views
Answer:
Answer: Interpret plots from DiffBind
10 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
1.1k
views
Answer:
Answer: Diff Bind Questions
10 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
862
views
Answer:
Answer: CHiP-Seq Questions
10 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
767
views
Answer:
Answer: Diffbind not calling sites as differentially bound
10 months ago by
Rory Stark
★ 2.0k
1
vote
0
replies
652
views
Answer:
Answer: Positive and negative value fold value in ATAC seq using DiffBind
12 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
2.0k
views
Answer:
Answer: Diffbind dba.count doesn't give FRiP score
12 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
2.0k
views
Answer:
Answer: Diffbind dba.count doesn't give FRiP score
13 months ago by
Rory Stark
★ 2.0k
0
votes
1
reply
870
views
Answer:
Answer: Diffbind: how to get raw read counts and normalized read counts
13 months ago by
Rory Stark
★ 2.0k
1
vote
0
replies
2.0k
views
Answer:
Answer: DiffBind reports no significant differentially enriched peaks
13 months ago by
Rory Stark
★ 2.0k
2
votes
0
replies
991
views
Answer:
Answer: Chip-seq Analysis
14 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
676
views
Answer:
Answer: Strange results from Diffbind-Deseq2 differential peak binding of cfChip-seq wit
updated 15 months ago by
Ram
43k • written 15 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
867
views
Answer:
Answer: Pipeline for quantitative ATAC-seq
15 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
1.7k
views
Answer:
Answer: DiffBind error: No contrasts added. There must be at least two sample groups wit
16 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
1.0k
views
Answer:
Answer: RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
16 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
1.1k
views
Answer:
Answer: Diffbind raw read counts
18 months ago by
Rory Stark
★ 2.0k
0
votes
1
reply
1.0k
views
Answer:
Answer: How to extract binding affinity matrix in Diffbind
18 months ago by
Rory Stark
★ 2.0k
2
votes
0
replies
4.2k
views
Answer:
Answer: ChIPQC BiocParallel errors
21 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
2.7k
views
Answer:
Answer: DiffBind dba.count() BiocParallel error
21 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
543
views
Answer:
Answer: ChIPQC read depth doesn't match BAM files
21 months ago by
Rory Stark
★ 2.0k
2
votes
1
reply
1.3k
views
Answer:
Answer: Diffbind with <3 reps?
22 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
2.8k
views
Answer:
Answer: Error in DiffBind. Please HELP!
23 months ago by
Rory Stark
★ 2.0k
1
vote
1
reply
2.1k
views
Answer:
Answer: How to make a read count matrix from multiple bed files generated by ROSE
23 months ago by
Rory Stark
★ 2.0k
1
vote
0
replies
1.2k
views
Answer:
Answer: DiffBind - Comparing normalization/background methods - how to create a heatmap
23 months ago by
Rory Stark
★ 2.0k
0
votes
0
replies
710
views
Answer:
Answer: DiffBind using static set of peaks for all samples
23 months ago by
Rory Stark
★ 2.0k
2
votes
0
replies
638
views
Answer:
Answer: Why does DiffBind use the count of reads that fall within peaks?
2.1 years ago by
Rory Stark
★ 2.0k
3
votes
1
reply
1.7k
views
Answer:
Answer: ATAC DiffBind: use peak or summit file?
2.1 years ago by
Rory Stark
★ 2.0k
1
vote
1
reply
2.9k
views
Answer:
Answer: DiffBind missing peaks and FRiP
2.2 years ago by
Rory Stark
★ 2.0k
1
vote
1
reply
822
views
Answer:
Answer: help for dba.count settings for RNAPII-ChIP using GRanges peakset
2.2 years ago by
Rory Stark
★ 2.0k
3
votes
1
reply
1.5k
views
Answer:
Answer: Problems with dba.analyze in DiffBind - are blacklists/greylists required to obt
2.2 years ago by
Rory Stark
★ 2.0k
2
votes
1
reply
986
views
Answer:
Answer: DiffBind normalization returned NULL
2.2 years ago by
Rory Stark
★ 2.0k
3
votes
2
replies
2.4k
views
Answer:
Answer: Error with dba.count
2.2 years ago by
Rory Stark
★ 2.0k
0
votes
0
replies
698
views
Answer:
Answer: How does diffbind extract the original coordinates of each difference peak
2.2 years ago by
Rory Stark
★ 2.0k
0
votes
1
reply
1.0k
views
Answer:
Answer: diffbind dba.report error
2.3 years ago by
Rory Stark
★ 2.0k
0
votes
0
replies
611
views
Answer:
Answer: standard deviation in DiffBind Consensus peaks
2.3 years ago by
Rory Stark
★ 2.0k
1
vote
0
replies
1.1k
views
Answer:
Answer: DiffBind spike-in normalisation with varying amounts of spike-in chromatin
2.4 years ago by
Rory Stark
★ 2.0k
3
votes
0
replies
3.7k
views
Answer:
Answer: why are all DiffBind tutorial's ATAC-seq peak intervals 400 bp for all intervals
2.4 years ago by
Rory Stark
★ 2.0k
0
votes
0
replies
1.1k
views
Answer:
Answer: dba.count reduces binding matrix, why?
2.6 years ago by
Rory Stark
★ 2.0k
0
votes
1
reply
1.1k
views
Answer:
Answer: RPKM on TSS using DiffBind
2.6 years ago by
Rory Stark
★ 2.0k
3
votes
1
reply
1.1k
views
Answer:
Answer: DiffBind - low number of significant peaks for one contrast
2.6 years ago by
Rory Stark
★ 2.0k
1
vote
0
replies
1.9k
views
Answer:
Answer: Diffbind adding my own consensus peaks
2.6 years ago by
Rory Stark
★ 2.0k
123 results • Page
1 of 3
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6