User: singlecell

gravatar for singlecell
singlecell0
Reputation:
0
Status:
New User
Last seen:
5 months, 2 weeks ago
Joined:
5 years, 11 months ago
Email:
a*********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by singlecell

<prev • 5 results • page 1 of 1 • next >
0
votes
0
answers
153
views
0
answers
Mapping multiple SRR ID from same experiment
... I am using fasterq-dump for obtaining fastq files. Some of the experiments corresponding to GSM ID are containing multiple SRR ID´s. e.g. GSM ID https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM2534657 SRA Run selector https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2636516 contains 3 SRR ...
alignment srrid gsmid fasterq-dump fastq-dump written 5 months ago by singlecell0
0
votes
0
answers
1.2k
views
0
answers
Comment: C: Downloading paired end fastq from SRA
... Can we analyze Single-cell Sequencing data without a .fastq file containing information related to UMI ? ...
written 8 months ago by singlecell0
0
votes
1
answer
531
views
1
answers
Answer: A: Evaluate single cell data to look at combinations of gene expression within sing
... You can coexpression networks for cells using WGCNA https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/ ...
written 17 months ago by singlecell0
0
votes
0
answers
378
views
0
answers
Comment: C: Multiple occurrences gene count quantified in single cell gene expression. Which
... Thanks for your help !!!! ...
written 17 months ago by singlecell0
0
votes
0
answers
378
views
0
answers
Multiple occurrences gene count quantified in single cell gene expression. Which unique gene count to consider for differential expression among samples
... Hi. The single cell gene expression for the cells had been perfomed using icell8 platform and the data is in this format Type gene_id gene_name sample bx READNAME um exon ENSG00000000457 SCYL3 Miao ACGAAGAGAGG 183 1 exon ENSG00000000457 SCYL3 Miao CTGGCTGG ...

Latest awards to singlecell

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 942 users visited in the last hour