User: danielestrife

gravatar for danielestrife
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Location:
Italy
Last seen:
4 years, 3 months ago
Joined:
5 years, 6 months ago
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Posts by danielestrife

<prev • 11 results • page 1 of 2 • next >
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Comment: A: Alternetive to GoldenHelix GWAS
... Thank you for you answer ...
written 5.5 years ago by danielestrife70
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Alternetive to GoldenHelix GWAS
... Good morning, i need to know if there is an open-source alternative to Golden Helix GWAS, http://www.goldenhelix.com/SNP_Variation/, do you know something similar but free-to-use?   Thanks in advance ...
gwas golden alternative helix written 5.5 years ago by danielestrife70
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Plotting file eigenvec
... Good morning, I'm doing a research on GWAS and I've obtained some file *.eigenvec* and *.eigenval* after executing the command `--pca` on PLINK 1.9. How can I plot those files? What software can i use for this purpose? Thank you in advance ...
gwas pca plink written 5.5 years ago by danielestrife70 • updated 7 weeks ago by zx87548.4k
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Answer: A: Conversion tools for GWAS
... So..I fixed the problem at last... I looked at the Makefile and saw that it was calling gfortran FC = gfortran which wasn't there on my file system... I change it to FC = gfortran-4.4 and recompiled the porgram using make clobber  make install and it's working fine. Thank you all , thank you ...
written 5.6 years ago by danielestrife70
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Comment: C: Conversion tools for GWAS
... I'm so sorry and i need a little more help  smartpca: smartpca: /usr/lib/x86_64-linux-gnu/libgfortran.so.1: version `GFORTRAN_1.4' not found (required by /usr/lib/liblapack.so.3) smartpca: /usr/lib/x86_64-linux-gnu/libgfortran.so.1: version `GFORTRAN_1.4' not found (required by /usr/lib/libblas.so ...
written 5.6 years ago by danielestrife70
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Answer: A: Conversion tools for GWAS
... smartpca: error while loading shared libraries: liblapack.so.3: cannot open shared object file: No such file or directory OOPS couldn't open file MDC_OMXEX_zcall_QC_pass.pca.evec for reading at ./smartpca.perl line 65. Those are the errors, i can't figure it out ...
written 5.6 years ago by danielestrife70
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Comment: C: Conversion tools for GWAS
... Nope i didn't put that now i will try it, ...
written 5.6 years ago by danielestrife70
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Answer: A: Conversion tools for GWAS
... @joey It gives me this error : sh: 1: smartpca: not found OOPS couldn't open file MDC_OMXEX_zcall_QC_pass.pca.evec for reading at ./smartpca.perl line 65.   ...
written 5.6 years ago by danielestrife70
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Comment: A: Conversion tools for GWAS
... @joey I will try when possible and i will tell you , thank you so much ...
written 5.6 years ago by danielestrife70
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Answer: A: Conversion tools for GWAS
... But i can't understand how it works, can you give me an example of command-line rule? ...
written 5.6 years ago by danielestrife70

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Popular Question 5.5 years ago, created a question with more than 1,000 views. For Conversion tools for GWAS

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