User: paulamic

gravatar for paulamic
paulamic20
Reputation:
20
Status:
New User
Location:
India
Last seen:
2 years, 6 months ago
Joined:
3 years, 7 months ago
Email:
p*******@jcbose.ac.in

Posts by paulamic

<prev • 8 results • page 1 of 1 • next >
0
votes
0
answers
814
views
0
answers
Comment: C: Mass spectrometry data analysis from PRIDE
... No it is a label free differential proteomics LC-MS baed. ...
written 3.1 years ago by paulamic20
0
votes
0
answers
814
views
0
answers
Mass spectrometry data analysis from PRIDE
... I am interested in analyzing the data from PRIDE archive (Project PXD000838). This study involves Shotgun Proteomics. My goal is to perform preprocessing of the data and then identify the differentially expressed proteins from it. I started with the rpx package of R.'pxfiles' usage shows the data h ...
mass spectrometry pride written 3.1 years ago by paulamic20
0
votes
2
answers
1.0k
views
2
answers
Answer: A: PRIDE Mass-Spec Published data analysis?
... Daniel Have you found the answer? Because I have a similar question. If you do have any tutorial on Mass spec data analysis (obtained from PRIDE) please suggest. Thanks in advance. Paulami ...
written 3.1 years ago by paulamic20
0
votes
2
answers
2.7k
views
2
answers
Comment: C: microRNA transcription start site prediction
... Thank you again for your guidance. Since I am new in this field I am afraid I am going to ask you some silly questions. I have no idea about these bedtools, can you please clarify a little on how to obtain the methylation marks using bedtools? Besides, can you please clarify the role of CpG islands ...
written 3.5 years ago by paulamic20
0
votes
2
answers
2.7k
views
2
answers
Comment: C: microRNA transcription start site prediction
... I found that you are also working on microRNA TFBS. I am doing similar kind of study in human genome. I have collected TSS of a list of human miRs. Now I want to study the promoter regions. Can you please tell me how to obtain the upstream sequences of these particular TSS? It will be really helpful ...
written 3.5 years ago by paulamic20
0
votes
2
answers
2.7k
views
2
answers
Comment: C: microRNA transcription start site prediction
... Thank you for the answer. ...
written 3.5 years ago by paulamic20
0
votes
2
answers
2.7k
views
2
answers
Answer: A: microRNA transcription start site prediction
... Thank you for the answer. Yes I am working with human genome. I have consulted miRStart earlier, but there I came across with some difficulties.   For instance take the microRNA hsa-miR-34a. Now, I have collected the 2kb upstream sequence from UCSC. It ranges from chr1:9211727-9213836 (its pre-miR ...
written 3.6 years ago by paulamic20
6
votes
2
answers
2.7k
views
2
answers
microRNA transcription start site prediction
... Hi there  I am interested in promoter analysis of microRNAs (miRs). I collected the 2 KB upstream sequences of pre-miRs from http://genome.ucsc.edu/cgi-bin/hgTables. Now I need to find out the Transcription start sites of these miRs. I was wondering is there any way to predict the Transcription Sta ...
promoter analysis microrna tss written 3.6 years ago by paulamic20

Latest awards to paulamic

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1456 users visited in the last hour