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1
reply
518
views
ArchR Doublet Inference to Signac
Signac scATAC-seq ArchR
updated 5 weeks ago by ★ 1.6k • written 14 months ago by ▴ 20
0
votes
1
reply
599
views
Error in H5Fopen
atac-seq scatac-seq
updated 5 months ago by • 0 • written 22 months ago by ▴ 20
0
votes
0
replies
293
views
Performing GO analysis from Differential Peaks
clusterProfiler Signac analysis atac-seq go
12 months ago by bioinformatics.girl ▴ 20
0
votes
1
reply
415
views
Please help with edgeR script
edgeR
updated 12 months ago by ★ 1.8k • written 12 months ago by ▴ 20
0
votes
0
replies
359
views
Too many differential peaks derived from FindMarkers() [Signac]
Signac ATAC scATAC-seq
12 months ago by bioinformatics.girl ▴ 20
3
votes
5
replies
3.6k
views
edgeR, Pseudobulk scRNA-seq
seurat scrna-seq edgeR
updated 12 months ago by ★ 7.0k • written 12 months ago by ▴ 20
0
votes
1
reply
949
views
Comment: Comment: Remove string from Seurat object metadata
12 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
949
views
Comment: Comment: Remove string from Seurat object metadata
12 months ago by bioinformatics.girl ▴ 20
0
votes
4
replies
949
views
Remove string from Seurat object metadata
seurat scrna
updated 12 months ago by 3.9k • written 12 months ago by ▴ 20
0
votes
1
reply
947
views
Comment: Comment: PSEUDOBULK HELP-DE Expression in scRNA-seq
12 months ago by bioinformatics.girl ▴ 20
0
votes
3
replies
947
views
PSEUDOBULK HELP-DE Expression in scRNA-seq
scRNA-seq seurat
updated 12 months ago by ★ 1.8k • written 12 months ago by ▴ 20
0
votes
1
reply
585
views
Remove string from Seurat Object
scRNA seurat
updated 12 months ago by ★ 1.6k • written 12 months ago by ▴ 20
0
votes
0
replies
375
views
Seurat Object Manipulation
seurat scATAC signac
12 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
293
views
Subsetting ATAC dataset
DARs scATAC-seq scATAC
12 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
375
views
scATAC integration
scatac-seq integration
updated 12 months ago by 141k • written 12 months ago by ▴ 20
0
votes
1
reply
475
views
ATAC Integration Help
scatac-seq integration atac-seq
updated 13 months ago by ▴ 50 • written 13 months ago by ▴ 20
0
votes
1
reply
1.1k
views
Comment: Comment: Seurat Metadata to Dataframe Manipulation
14 months ago by bioinformatics.girl ▴ 20
0
votes
3
replies
1.1k
views
Seurat Metadata to Dataframe Manipulation
rstudio seurat scrna-seq
updated 14 months ago by ▴ 390 • written 14 months ago by ▴ 20
1
vote
2
replies
847
views
MACS to Signac
scatac-seq
updated 14 months ago by 82k • written 14 months ago by ▴ 20
1
vote
1
reply
532
views
MACS Error
scatac-seq peak-calling Macs
updated 14 months ago by 43k • written 14 months ago by ▴ 20
1
vote
8
replies
3.1k
views
R Columns to Seurat Object
seurat scrna-seq
updated 14 months ago by • 0 • written 15 months ago by ▴ 20
0
votes
0
replies
643
views
Comment: Comment: scATAC-seq workflow
14 months ago by bioinformatics.girl ▴ 20
0
votes
2
replies
643
views
scATAC-seq workflow
Signac scATAC-seq
14 months ago by bioinformatics.girl ▴ 20
0
votes
1
reply
1.9k
views
Comment: Comment: CoveragePlot in Signac from MACS2 Object
14 months ago by bioinformatics.girl ▴ 20
0
votes
1
reply
1.9k
views
Comment: Comment: CoveragePlot in Signac from MACS2 Object
14 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
343
views
scATAC merging of files
Signac scATAC-seq
14 months ago by bioinformatics.girl ▴ 20
0
votes
1
reply
1.9k
views
Comment: Comment: CoveragePlot in Signac from MACS2 Object
14 months ago by bioinformatics.girl ▴ 20
0
votes
7
replies
1.9k
views
CoveragePlot in Signac from MACS2 Object
Signac scATAC-seq
updated 14 months ago by 11k • written 14 months ago by ▴ 20
0
votes
1
reply
363
views
SetAllIdents and Idents function not found
scrna-seq
updated 15 months ago by ★ 27k • written 15 months ago by ▴ 20
0
votes
1
reply
3.1k
views
Comment: Comment: R Columns to Seurat Object
15 months ago by bioinformatics.girl ▴ 20
0
votes
1
reply
3.1k
views
Comment: Comment: R Columns to Seurat Object
15 months ago by bioinformatics.girl ▴ 20
0
votes
1
reply
3.1k
views
Comment: Comment: R Columns to Seurat Object
15 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
1.5k
views
Comment: Comment: UMAP Cluster separation
15 months ago by bioinformatics.girl ▴ 20
2
votes
5
replies
1.5k
views
UMAP Cluster separation
seurat ggplot umap scrna-seq
15 months ago by bioinformatics.girl ▴ 20
0
votes
1
reply
1.5k
views
Comment: Comment: UMAP Cluster separation
15 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
631
views
Comment: Comment: Fisher Exact Test against two Seurat Objects
15 months ago by bioinformatics.girl ▴ 20
0
votes
2
replies
631
views
Fisher Exact Test against two Seurat Objects
superexacttest fisher seurat scrna-seq
15 months ago by bioinformatics.girl ▴ 20
0
votes
1
reply
1.3k
views
Comment: Comment: Error in Seurat ScaleData() function
15 months ago by bioinformatics.girl ▴ 20
2
votes
6
replies
1.3k
views
Error in Seurat ScaleData() function
seurat scrna-seq snrna-seq
updated 15 months ago by 141k • written 15 months ago by ▴ 20
0
votes
1
reply
1.3k
views
Comment: Comment: Error in Seurat ScaleData() function
15 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
2.1k
views
Comment: Comment: UMAP labeling manipulation
15 months ago by bioinformatics.girl ▴ 20
0
votes
3
replies
2.1k
views
UMAP labeling manipulation
scrna-seq seurat umap
15 months ago by bioinformatics.girl ▴ 20
0
votes
1
reply
939
views
Error with Tabix file
Signac atac atac-seq
updated 16 months ago by 161k • written 16 months ago by ▴ 20
0
votes
0
replies
683
views
Comment: Comment: Why can't I quantify the peaks (scATAC)?
16 months ago by bioinformatics.girl ▴ 20
0
votes
2
replies
683
views
Why can't I quantify the peaks (scATAC)?
Signac ATAC snATAC scATAC
16 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
302
views
CellBender vs CellRanger
snrna-seq
17 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
552
views
Comment: Comment: When to merge scRNA datasets
18 months ago by bioinformatics.girl ▴ 20
0
votes
2
replies
552
views
When to merge scRNA datasets
scRNA-seq scRNA seurat
18 months ago by bioinformatics.girl ▴ 20
1
vote
2
replies
547
views
.BAM to .BED to Coverage Plots
scATAC-seq Macs scatac signac
18 months ago by bioinformatics.girl ▴ 20
0
votes
0
replies
547
views
Comment: Comment: .BAM to .BED to Coverage Plots
18 months ago by bioinformatics.girl ▴ 20
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