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ATAC Integration Help
scatac-seq integration atac-seq
updated 22 days ago by ▴ 50 • written 22 days ago by ▴ 10
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1
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364
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Comment: Comment: Seurat Metadata to Dataframe Manipulation
5 weeks ago by bioinformatics.girl ▴ 10
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3
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364
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Seurat Metadata to Dataframe Manipulation
rstudio seurat scrna-seq
updated 5 weeks ago by ▴ 370 • written 5 weeks ago by ▴ 10
0
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0
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134
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ArchR Doublet Inference to Signac
Signac scATAC-seq ArchR
updated 5 weeks ago by 71k • written 5 weeks ago by ▴ 10
1
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2
replies
277
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MACS to Signac
scatac-seq
updated 5 weeks ago by 71k • written 5 weeks ago by ▴ 10
1
vote
1
reply
208
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MACS Error
scatac-seq peak-calling Macs
updated 5 weeks ago by 38k • written 5 weeks ago by ▴ 10
0
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8
replies
882
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R Columns to Seurat Object
seurat scrna-seq
updated 7 weeks ago by • 0 • written 9 weeks ago by ▴ 10
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0
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289
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Comment: Comment: scATAC-seq workflow
7 weeks ago by bioinformatics.girl ▴ 10
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2
replies
289
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scATAC-seq workflow
Signac scATAC-seq
7 weeks ago by bioinformatics.girl ▴ 10
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1
reply
757
views
Comment: Comment: CoveragePlot in Signac from MACS2 Object
8 weeks ago by bioinformatics.girl ▴ 10
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1
reply
757
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Comment: Comment: CoveragePlot in Signac from MACS2 Object
8 weeks ago by bioinformatics.girl ▴ 10
0
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0
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187
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scATAC merging of files
Signac scATAC-seq
8 weeks ago by bioinformatics.girl ▴ 10
0
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1
reply
757
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Comment: Comment: CoveragePlot in Signac from MACS2 Object
8 weeks ago by bioinformatics.girl ▴ 10
0
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7
replies
757
views
CoveragePlot in Signac from MACS2 Object
Signac scATAC-seq
updated 8 weeks ago by 11k • written 8 weeks ago by ▴ 10
0
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1
reply
161
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SetAllIdents and Idents function not found
scrna-seq
updated 9 weeks ago by ★ 23k • written 9 weeks ago by ▴ 10
0
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1
reply
882
views
Comment: Comment: R Columns to Seurat Object
9 weeks ago by bioinformatics.girl ▴ 10
0
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1
reply
882
views
Comment: Comment: R Columns to Seurat Object
9 weeks ago by bioinformatics.girl ▴ 10
0
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1
reply
882
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Comment: Comment: R Columns to Seurat Object
9 weeks ago by bioinformatics.girl ▴ 10
0
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0
replies
607
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Comment: Comment: UMAP Cluster separation
10 weeks ago by bioinformatics.girl ▴ 10
1
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5
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607
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UMAP Cluster separation
seurat ggplot umap scrna-seq
10 weeks ago by bioinformatics.girl ▴ 10
0
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1
reply
607
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Comment: Comment: UMAP Cluster separation
11 weeks ago by bioinformatics.girl ▴ 10
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0
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346
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Comment: Comment: Fisher Exact Test against two Seurat Objects
11 weeks ago by bioinformatics.girl ▴ 10
0
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2
replies
346
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Fisher Exact Test against two Seurat Objects
superexacttest fisher seurat scrna-seq
11 weeks ago by bioinformatics.girl ▴ 10
0
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1
reply
615
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Comment: Comment: Error in Seurat ScaleData() function
11 weeks ago by bioinformatics.girl ▴ 10
2
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6
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615
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Error in Seurat ScaleData() function
seurat scrna-seq snrna-seq
updated 11 weeks ago by 127k • written 11 weeks ago by ▴ 10
0
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1
reply
615
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Comment: Comment: Error in Seurat ScaleData() function
11 weeks ago by bioinformatics.girl ▴ 10
0
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0
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657
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Comment: Comment: UMAP labeling manipulation
12 weeks ago by bioinformatics.girl ▴ 10
0
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3
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657
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UMAP labeling manipulation
scrna-seq seurat umap
12 weeks ago by bioinformatics.girl ▴ 10
0
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1
reply
383
views
Error with Tabix file
Signac atac atac-seq
updated 3 months ago by 153k • written 3 months ago by ▴ 10
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0
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309
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Comment: Comment: Why can't I quantify the peaks (scATAC)?
3 months ago by bioinformatics.girl ▴ 10
0
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2
replies
309
views
Why can't I quantify the peaks (scATAC)?
Signac ATAC snATAC scATAC
3 months ago by bioinformatics.girl ▴ 10
0
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0
replies
146
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CellBender vs CellRanger
snrna-seq
4 months ago by bioinformatics.girl ▴ 10
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0
replies
347
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Comment: Comment: When to merge scRNA datasets
5 months ago by bioinformatics.girl ▴ 10
0
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2
replies
347
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When to merge scRNA datasets
scRNA-seq scRNA seurat
5 months ago by bioinformatics.girl ▴ 10
1
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2
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296
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.BAM to .BED to Coverage Plots
scATAC-seq Macs scatac signac
5 months ago by bioinformatics.girl ▴ 10
0
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0
replies
296
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Comment: Comment: .BAM to .BED to Coverage Plots
5 months ago by bioinformatics.girl ▴ 10
0
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1
reply
299
views
ArchRtoSignac
archr archrtosignac archr2signac signac
updated 5 months ago by 127k • written 5 months ago by ▴ 10
0
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0
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139
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Calling peaks with MACS following Bedtools
scATAC-seq bedtools signac
5 months ago by bioinformatics.girl ▴ 10
0
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0
replies
583
views
Comment: Comment: Using Harmony on scATAC Count Files
7 months ago by bioinformatics.girl ▴ 10
0
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2
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583
views
Comment: Comment: Using Harmony on scATAC Count Files
7 months ago by bioinformatics.girl ▴ 10
2
votes
5
replies
583
views
Using Harmony on scATAC Count Files
scatac-seq ArchR Signac
7 months ago by bioinformatics.girl ▴ 10
1
vote
1
reply
308
views
How to create count file from fastq files
cellranger scATAC-seq cellranger-atac
updated 8 months ago by 127k • written 8 months ago by ▴ 10
8
votes
15
replies
903
views
8 follow
gunzip error: File not in gzip format
gunzip linux gzip
updated 9 months ago by 11k • written 9 months ago by ▴ 10
0
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2
replies
903
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Comment: Comment: File not in gzip format
9 months ago by bioinformatics.girl ▴ 10
0
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0
replies
903
views
Comment: Comment: File not in gzip format
9 months ago by bioinformatics.girl ▴ 10
0
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0
replies
903
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Comment: Comment: File not in gzip format
9 months ago by bioinformatics.girl ▴ 10
0
votes
1
reply
903
views
Comment: Comment: File not in gzip format
9 months ago by bioinformatics.girl ▴ 10
0
votes
2
replies
557
views
"Object of type 'closure' is not subsettable" Error
atac-seq scatac-seq archr
updated 9 months ago by 8.6k • written 9 months ago by ▴ 10
0
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0
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192
views
Error in H5Fopen
atac-seq scatac-seq
9 months ago by bioinformatics.girl ▴ 10
0
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1
reply
1.9k
views
Comment: Comment: Column lengths differ error (ArchR)
9 months ago by bioinformatics.girl ▴ 10
68 results • Page 1 of 2
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