User: Camilla

gravatar for Camilla
Camilla10
Reputation:
10
Status:
New User
Location:
European Union
Last seen:
1 year, 4 months ago
Joined:
6 years, 1 month ago
Email:
c*****************@gmail.com

Posts by Camilla

<prev • 4 results • page 1 of 1 • next >
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Comment: C: how to create a fasta file with subset of sequences using seqinr
... Thank you very much Chirag for the solution ! Now it works! ...
written 16 months ago by Camilla10
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how to create a fasta file with subset of sequences using seqinr
... Hi everyone, I am very new in environment R. I am trying to obtain a final fasta file selecting a subset of sequences from a downloaded fasta file, using seqinr. For this purpose I type the following script: myfasta<- read.fasta(file = "MRP2.fas", seqtype = "AA",as.string = TRUE, set.attrib ...
seqin R sequences fasta written 16 months ago by Camilla10 • updated 12 months ago by Biostar ♦♦ 20
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Answer: A: how to parse blast output using biopython
... I also tried with "hsp.expect <100" ...but is the same :( ...
written 6.1 years ago by Camilla10
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how to parse blast output using biopython
... Dear all, I am new to Biopython and have tried to parse my output blast file. My script is: from Bio.Blast import NCBIXML result=open("blast_anoC.xml","r") records= NCBIXML.parse(result) item=next(records) for alignment in item.alignments: for hsp in alignment.hsps: if ...
biopython blast written 6.1 years ago by Camilla10 • updated 19 months ago by malj20

Latest awards to Camilla

Great Question 6.1 years ago, created a question with more than 5,000 views. For how to parse blast output using biopython
Epic Question 6.1 years ago, created a question with more than 10,000 views. For how to parse blast output using biopython
Popular Question 6.1 years ago, created a question with more than 1,000 views. For how to parse blast output using biopython

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