User: ashwani.vit

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Posts by ashwani.vit

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Answer: A: RIGER extension in GENE-E
... Hi, This is what I did 1) Download the RIGER.jar file 2) Put it in the extensions directory. (/home/GENE-E/extensions) 3) Launched the GENE-E After launching GENE-E (GUI), where should I navigate to find the RIGER option? I am not getting any error message. I am having difficulty in navigating ...
written 6 days ago by ashwani.vit0
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RIGER extension in GENE-E
... Hello all, I am trying to make RIGER work through GENE-E. Earlier I tried adding the RIGER extension to home directory as instructed at https://software.broadinstitute.org/GENE-E/extensions.html. But could not make it work. Has anyone faced any issue similar to above while using RIGER through GENE ...
crispr gene ranking next-gen sequencing written 7 days ago by ashwani.vit0
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Comment: C: Error while running ExomeDepth
... for (i in 1:nsamples){ my.choice <- select.reference.set (test.counts = ExomeCount.mat[,i], reference.counts = my.reference.set, bin.length = (ExomeCount.dafr$end - ExomeCount.dafr$start)/1000, ...
written 13 months ago by ashwani.vit0
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Error while running ExomeDepth
... Hello, While running exomeDepth, I got the following error: **Error in `[<-.data.frame`(`*tmp*`, , column.name, value = c(NA_character_, : replacement has 2 rows, data has 0 Calls: AnnotateExtra -> AnnotateExtra -> [<- -> [<-.data.frame** I have 2 control samples and 2 test sa ...
wgs R written 13 months ago by ashwani.vit0
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Comment: A: Metasim For Human Reads
... Hi, I am trying to simulate a metagenomic dataset using metasim. Could you please let me know what does "abundance value" means. Ashwani  ...
written 3.2 years ago by ashwani.vit0

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