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Showing :
questions
0
votes
0
replies
90
views
How to check if a few pathways have relationship?
MSigdb
REACTOME
KEGG
1 day ago by
Chris
▴ 260
0
votes
0
replies
85
views
Number of pathway result from GSVA
GSVA
1 day ago by
Chris
▴ 260
0
votes
2
replies
217
views
Limma compare between 3 conditions vs 2 conditions
Limma
1 day ago by
Chris
▴ 260
1
vote
1
reply
475
views
Help with SCENIC+
scenic-plus
updated 5 days ago by
corbettberry
▴ 10 • written 5 months ago by
Chris
▴ 260
4
votes
5
replies
352
views
Differential express genes in imbalance groups
Limma
9 days ago by
Chris
▴ 260
1
vote
2
replies
238
views
Upset plot
upsetplot
10 days ago by
Chris
▴ 260
0
votes
2
replies
233
views
How to get genes in a gene set in msigdb?
msigdb
17 days ago by
Chris
▴ 260
0
votes
0
replies
114
views
Function normalize raw microarray data for GSVA
gsva
18 days ago by
Chris
▴ 260
0
votes
0
replies
384
views
Error in validObject(.Object) : invalid class “ExpressionSet” object: sampleNames differ between assayData and phenoData
GSVA
28 days ago by
Chris
▴ 260
5
votes
4
replies
387
views
Differential expression at pathway level
GSVA
updated 5 weeks ago by
AquaDeath
▴ 80 • written 5 weeks ago by
Chris
▴ 260
7
votes
12
replies
1.7k
views
Integrated genes from bulk RNA seq and ATAC seq
ATAC-seq
bulk-RNA
updated 7 weeks ago by
Ram
43k • written 10 months ago by
Chris
▴ 260
4
votes
11
replies
543
views
Remove X in row name with only number
GSVA
updated 7 weeks ago by
Ram
43k • written 7 weeks ago by
Chris
▴ 260
12
votes
20
replies
1.1k
views
Help with gatk BaseRecalibrator
GATK
variant-calling
updated 3 months ago by
Ram
43k • written 3 months ago by
Chris
▴ 260
6
votes
4
replies
1.8k
views
Methods to integrate ATAC-seq and RNA-seq
RNA-seq
ATAC-seq
updated 3 months ago by
Tao Zhu
▴ 10 • written 8 months ago by
Chris
▴ 260
2
votes
2
replies
357
views
Help with gatk CreateSequenceDictionary
GATK
updated 3 months ago by
GenoMax
140k • written 3 months ago by
Chris
▴ 260
2
votes
2
replies
1.0k
views
Help with scvelo
scvelo
updated 4 months ago by
Prakki Rama
★ 2.7k • written 5 months ago by
Chris
▴ 260
0
votes
0
replies
403
views
Help with cellchat error
cellchat
updated 5 months ago by
Ram
43k • written 5 months ago by
Chris
▴ 260
6
votes
10
replies
1.1k
views
Visualization of RNA-seq gene expression only one gene of interest between 2 conditions
RNA-seq
5 months ago by
Chris
▴ 260
1
vote
0
replies
234
views
Help with Enrichr clustergram
enrichr
5 months ago by
Chris
▴ 260
5
votes
7
replies
800
views
Novel disease mechanism papers from RNA-seq
RNA-seq
updated 5 months ago by
GenoMax
140k • written 5 months ago by
Chris
▴ 260
1
vote
7
replies
781
views
Ribosomal cluster
seurat
single-cell
5 months ago by
Chris
▴ 260
2
votes
4
replies
632
views
Can't find a gene in single cell
single-cell
5 months ago by
Chris
▴ 260
0
votes
0
replies
313
views
How to get RPKM from count matrix
RPKM
5 months ago by
Chris
▴ 260
2
votes
2
replies
623
views
Scvelo vs Monocle3
monocle3
scvelo
5 months ago by
Chris
▴ 260
1
vote
1
reply
464
views
Help with error velocyto
velocyto
5 months ago by
Chris
▴ 260
4
votes
10
replies
1.2k
views
Help with error running velocyto
velocyto
5 months ago by
Chris
▴ 260
3
votes
5
replies
1.0k
views
How to get the gft file to run velocyto for velocity analysis?
velocity
updated 10 weeks ago by
e.r.zakiev
▴ 170 • written 6 months ago by
Chris
▴ 260
3
votes
4
replies
840
views
Network analysis with cytoscape
RNA-seq
cytoscape
6 months ago by
Chris
▴ 260
14
votes
18
replies
2.0k
views
Clustering in single cell
seurat
single-cell
updated 5 months ago by
e.r.zakiev
▴ 170 • written 6 months ago by
Chris
▴ 260
2
votes
4
replies
608
views
Which function is best for pathway analysis?
pathway
6 months ago by
Chris
▴ 260
7
votes
7
replies
795
views
Filter human transcription factors
transcription-factor
RNA-seq
updated 6 months ago by
jared.andrews07
★ 16k • written 6 months ago by
Chris
▴ 260
10
votes
8
replies
992
views
Adding a control sample to bulk RNA-seq
RNA-seq
6 months ago by
Chris
▴ 260
6
votes
8
replies
890
views
Find potential important genes from bulk-RNA seq experiment
RNA-seq
6 months ago by
Chris
▴ 260
2
votes
4
replies
672
views
Help with celltype annotation
seurat
single-cell
6 months ago by
Chris
▴ 260
0
votes
7
replies
1.1k
views
How to get top 10 genes expressed in a cluster ( for cell type identification)?
seurat
updated 5 months ago by
yhdist
▴ 70 • written 6 months ago by
Chris
▴ 260
0
votes
0
replies
305
views
Help with Mofa2
multiome
mofa2
updated 6 months ago by
Ram
43k • written 6 months ago by
Chris
▴ 260
1
vote
0
replies
264
views
Genes in open chromatin region
ATAC-seq
DiffBind
6 months ago by
Chris
▴ 260
0
votes
0
replies
340
views
R crash when running leiden algorithm
seurat
updated 6 months ago by
Ram
43k • written 6 months ago by
Chris
▴ 260
6
votes
6
replies
2.1k
views
Help with error scanpy
scanpy
updated 8 weeks ago by
sredemption
• 0 • written 6 months ago by
Chris
▴ 260
0
votes
0
replies
287
views
Help with scvi error
scvi
updated 6 months ago by
Ram
43k • written 6 months ago by
Chris
▴ 260
0
votes
0
replies
271
views
Help with single cell annotation
single-cell
updated 6 months ago by
Ram
43k • written 6 months ago by
Chris
▴ 260
8
votes
4
replies
992
views
How to remove the gene label in heatmap RNA-seq
complexheatmap
6 months ago by
Chris
▴ 260
2
votes
3
replies
715
views
How to label only a few genes of interest in heatmap of bulk RNA-seq
RNA-seq
updated 6 months ago by
Ram
43k • written 6 months ago by
Chris
▴ 260
7
votes
13
replies
1.4k
views
Help with Error: Required version of NumPy not available: installation of Numpy >= 1.6 not found
seurat
leiden
7 months ago by
Chris
▴ 260
2
votes
5
replies
638
views
Centrality analysis to identify TFs
TF
updated 7 months ago by
biofalconch
★ 1.1k • written 7 months ago by
Chris
▴ 260
2
votes
4
replies
615
views
Help with error using ClosetFeature() in Signac
signac
ATAC
7 months ago by
Chris
▴ 260
3
votes
6
replies
933
views
Output FindMarkers()
seurat
7 months ago by
Chris
▴ 260
4
votes
7
replies
1.2k
views
Help with Error: None of the requested features were found: PECAM1 in slot data
seurat
multiome
7 months ago by
Chris
▴ 260
0
votes
0
replies
346
views
Help with analyze single cell multiome (RNA and ATAC-seq)
seurat
signac
multiome
7 months ago by
Chris
▴ 260
3
votes
3
replies
505
views
How to choose the number of cluster in single cell multiome (RNA & ATAC)
multiome
7 months ago by
Chris
▴ 260
135 results • Page
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