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Showing :
questions
0
votes
0
replies
192
views
Your suggestion how to annotate cell type from visium data
spatial-transcriptomics
11 weeks ago by
Chris
▴ 340
1
vote
4
replies
720
views
Help with subset seurat object by a column in metadata
seurat
3 months ago by
Chris
▴ 340
0
votes
0
replies
269
views
Gene-pathway network with FDR or p value
clusterprofiler
5 months ago by
Chris
▴ 340
11
votes
11
replies
987
views
Can't increase font size for x axis
R
ggplot2
6 months ago by
Chris
▴ 340
0
votes
2
replies
468
views
Help with cnet plot for customize pathway from MSigDb
cnet
6 months ago by
Chris
▴ 340
5
votes
5
replies
874
views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
EGSEA
8 months ago by
Chris
▴ 340
0
votes
0
replies
295
views
Empty table plot using plotGseaTable()
FGSEA
8 months ago by
Chris
▴ 340
0
votes
0
replies
262
views
Filter low express genes in microarray data
microarray
8 months ago by
Chris
▴ 340
1
vote
1
reply
628
views
Difference when using difference number of pathways score to compare between 3 groups
GSVA
Limma
updated 9 months ago by
Gordon Smyth
★ 7.8k • written 9 months ago by
Chris
▴ 340
0
votes
0
replies
259
views
How to annotate pairwise p value from limma (3 groups) in a combine multiple boxplot?
limma
boxplot
9 months ago by
Chris
▴ 340
3
votes
3
replies
611
views
Visualize pathways from MSigDB
MSigdb
9 months ago by
Chris
▴ 340
0
votes
0
replies
231
views
How to check if a few pathways have relationship?
MSigdb
REACTOME
KEGG
9 months ago by
Chris
▴ 340
0
votes
0
replies
233
views
Number of pathway result from GSVA
GSVA
9 months ago by
Chris
▴ 340
1
vote
3
replies
647
views
Limma compare between 3 conditions vs 2 conditions
Limma
updated 9 months ago by
Gordon Smyth
★ 7.8k • written 9 months ago by
Chris
▴ 340
1
vote
1
reply
768
views
Help with SCENIC+
scenic-plus
updated 9 months ago by
corbettberry
▴ 10 • written 14 months ago by
Chris
▴ 340
4
votes
5
replies
852
views
Differential express genes in imbalance groups
Limma
10 months ago by
Chris
▴ 340
1
vote
2
replies
439
views
Upset plot
upsetplot
10 months ago by
Chris
▴ 340
0
votes
2
replies
441
views
How to get genes in a gene set in msigdb?
msigdb
9 months ago by
Chris
▴ 340
0
votes
0
replies
252
views
Function normalize raw microarray data for GSVA
gsva
10 months ago by
Chris
▴ 340
0
votes
0
replies
548
views
Error in validObject(.Object) : invalid class “ExpressionSet” object: sampleNames differ between assayData and phenoData
GSVA
10 months ago by
Chris
▴ 340
5
votes
4
replies
699
views
Differential expression at pathway level
GSVA
updated 11 months ago by
AquaDeath
▴ 80 • written 11 months ago by
Chris
▴ 340
7
votes
12
replies
2.6k
views
Integrated genes from bulk RNA seq and ATAC seq
ATAC-seq
bulk-RNA
updated 11 months ago by
Ram
44k • written 20 months ago by
Chris
▴ 340
4
votes
11
replies
1.2k
views
Remove X in row name with only number
GSVA
updated 11 months ago by
Ram
44k • written 11 months ago by
Chris
▴ 340
12
votes
20
replies
2.2k
views
Help with gatk BaseRecalibrator
GATK
variant-calling
updated 13 months ago by
Ram
44k • written 13 months ago by
Chris
▴ 340
6
votes
4
replies
3.4k
views
Methods to integrate ATAC-seq and RNA-seq
RNA-seq
ATAC-seq
updated 13 months ago by
Tao Zhu
▴ 10 • written 18 months ago by
Chris
▴ 340
2
votes
2
replies
701
views
Help with gatk CreateSequenceDictionary
GATK
updated 13 months ago by
GenoMax
148k • written 13 months ago by
Chris
▴ 340
2
votes
2
replies
1.6k
views
Help with scvelo
scvelo
updated 14 months ago by
Prakki Rama
★ 2.7k • written 15 months ago by
Chris
▴ 340
0
votes
0
replies
810
views
Help with cellchat error
cellchat
updated 14 months ago by
Ram
44k • written 14 months ago by
Chris
▴ 340
6
votes
10
replies
2.3k
views
Visualization of RNA-seq gene expression only one gene of interest between 2 conditions
RNA-seq
15 months ago by
Chris
▴ 340
1
vote
0
replies
344
views
Help with Enrichr clustergram
enrichr
15 months ago by
Chris
▴ 340
5
votes
7
replies
1.2k
views
Novel disease mechanism papers from RNA-seq
RNA-seq
updated 15 months ago by
GenoMax
148k • written 15 months ago by
Chris
▴ 340
1
vote
7
replies
1.4k
views
Ribosomal cluster
seurat
single-cell
15 months ago by
Chris
▴ 340
2
votes
4
replies
955
views
Can't find a gene in single cell
single-cell
15 months ago by
Chris
▴ 340
0
votes
0
replies
426
views
How to get RPKM from count matrix
RPKM
15 months ago by
Chris
▴ 340
3
votes
2
replies
1.2k
views
Scvelo vs Monocle3
monocle3
scvelo
15 months ago by
Chris
▴ 340
1
vote
1
reply
743
views
Help with error velocyto
velocyto
15 months ago by
Chris
▴ 340
4
votes
10
replies
2.2k
views
Help with error running velocyto
velocyto
15 months ago by
Chris
▴ 340
3
votes
5
replies
2.0k
views
How to get the gft file to run velocyto for velocity analysis?
velocity
updated 12 months ago by
e.r.zakiev
▴ 230 • written 15 months ago by
Chris
▴ 340
3
votes
4
replies
1.3k
views
Network analysis with cytoscape
RNA-seq
cytoscape
15 months ago by
Chris
▴ 340
14
votes
20
replies
4.0k
views
6 follow
Clustering in single cell
seurat
single-cell
12 weeks ago by
Chris
▴ 340
2
votes
4
replies
1.1k
views
Which function is best for pathway analysis?
pathway
15 months ago by
Chris
▴ 340
7
votes
7
replies
1.4k
views
Filter human transcription factors
transcription-factor
RNA-seq
updated 15 months ago by
jared.andrews07
★ 18k • written 15 months ago by
Chris
▴ 340
10
votes
8
replies
1.4k
views
Adding a control sample to bulk RNA-seq
RNA-seq
16 months ago by
Chris
▴ 340
6
votes
8
replies
1.3k
views
Find potential important genes from bulk-RNA seq experiment
RNA-seq
16 months ago by
Chris
▴ 340
2
votes
4
replies
904
views
Help with celltype annotation
seurat
single-cell
16 months ago by
Chris
▴ 340
0
votes
7
replies
1.7k
views
How to get top 10 genes expressed in a cluster ( for cell type identification)?
seurat
updated 15 months ago by
yhdist
▴ 70 • written 16 months ago by
Chris
▴ 340
0
votes
0
replies
410
views
Help with Mofa2
multiome
mofa2
updated 16 months ago by
Ram
44k • written 16 months ago by
Chris
▴ 340
1
vote
0
replies
394
views
Genes in open chromatin region
ATAC-seq
DiffBind
16 months ago by
Chris
▴ 340
0
votes
0
replies
530
views
R crash when running leiden algorithm
seurat
updated 16 months ago by
Ram
44k • written 16 months ago by
Chris
▴ 340
6
votes
6
replies
3.1k
views
Help with error scanpy
scanpy
updated 11 months ago by
sredemption
• 0 • written 16 months ago by
Chris
▴ 340
146 results • Page
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