User: flame233

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flame23310
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Posts by flame233

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Answer: A: Can SCWRL process more than one amino acid chain at the same time?
... Already found the answer. The program reads the chain sequences in a linear sense, like: A->B->C. Then you just have to add the “-s” file sequence in the same order, without any interruptions. E.g PDB file: chain A: LEQVKHECHFFNGTERV chain B: RFLDRYFYHQEEYVRFD chain C: SDVGEYRAVT -s file: le ...
written 2.9 years ago by flame23310
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Can SCWRL process more than one amino acid chain at the same time?
... Hello, I’ve been learning to make mutations to a single beta chain of an HLA molecule with SCWRL and had success so far. However, I was wondering if it is possible to make mutations in the Alfa, Beta, and peptide chains all at the same time, in one run by processing the entire pdb file, without del ...
scwrl4 homology modelling scwrl3 scwrl written 2.9 years ago by flame23310
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Comment: C: NCBI FASTA files are a bit crazy
... Yes, FTP worked perfectly, thanks everyone for your help ...
written 5.0 years ago by flame23310
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Comment: C: NCBI FASTA files are a bit crazy
... Thanks, i will give it a try and post feedback :)   Edit: It worked perfectly, i can acces the whole sequence with no trouble. Thanks a lot :) ...
written 5.1 years ago by flame23310
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Comment: C: NCBI FASTA files are a bit crazy
... From: http://www.ncbi.nlm.nih.gov/nuccore/NC_017534.1 Send tab -> Coding sequences -> FASTA Protein ...
written 5.1 years ago by flame23310
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NCBI FASTA files are a bit crazy
... Hello everyone. I am new to bioinformatics, although i have been around these forums for a while. As for my question, I am working with protein sequences from completed genomes of a bacteria, but I have noticed that something weird (or interesting) happens to the downloaded proteomes and genomes th ...
ncbi genome tool proteome fasta written 5.1 years ago by flame23310 • updated 5.1 years ago by genomax85k
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Answer: A: Unable to access the published software MetaRouter, any ideas? :c
... So far no answer. I'll keep looking and learning more about the subject. For anyone that is interested too, you can begin with this article. http://www.researchgate.net/publication/221839968_Systems_biology_approach_to_bioremediation I'll keep coming back to learn more ;) ...
written 6.2 years ago by flame23310
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Comment: A: Unable to access the published software MetaRouter, any ideas? :c
... Thanks man. I'll give it a try ...
written 6.2 years ago by flame23310
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Unable to access the published software MetaRouter, any ideas? :c
...   Hi there. So I was looking into this article about a software called "Metarouter": http://nar.oxfordjournals.org/content/33/suppl_1/D588.long (just for information purposes) Took me to this site http://www.pdg.cnb.uam.es/biodeg_net/MetaRouter/ But the download link goes 404. I tried looking a ...
software bioinformatics bioremediation metarouter written 6.2 years ago by flame23310 • updated 5.8 years ago by Biostar ♦♦ 20

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Scholar 2.9 years ago, created an answer that has been accepted. For A: Can SCWRL process more than one amino acid chain at the same time?

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