User: neja

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neja40
Reputation:
40
Status:
New User
Location:
Japan
Last seen:
3 years, 11 months ago
Joined:
6 years ago
Email:
m*******@gmail.com

Posts by neja

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Identify dovetail read-pairs from a bam/sam file
... Hi, Is there a way to identify read pairs which are aligned as "dove-tail" by bowtie2? I've used the flag --dovetail while mapping with bowtie2. ...
alignment written 3.9 years ago by neja40 • updated 3.9 years ago by Pierre Lindenbaum128k
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Comment: C: Can EdgeR of DeSeq be used for Single-cell RNA-seq?
... Thanks dariober for your response. I'm aware of Monocle and am currently using it. But what I wanted to know is that can the standard RNA-seq tools be used for single-cell RNA-seq?Are there no specific requirements for single-cell rna-seq in terms of normalization etc, given that single-cell has th ...
written 6.1 years ago by neja40
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Can EdgeR of DeSeq be used for Single-cell RNA-seq?
... Hi all, I've a single-cell rna-seq data and need identify DE genes across different cell groups. I would like to know can we use edgeR of DESeq for DE analysis of single-cells? If yes, then do we use the cells of the same group as replicates? Thanks in advance!   ...
rna-seq written 6.1 years ago by neja40 • updated 5 days ago by ATpoint34k

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Popular Question 6.1 years ago, created a question with more than 1,000 views. For Can EdgeR of DeSeq be used for Single-cell RNA-seq?

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