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Posts by neja
... Hi, Is there a way to identify read pairs which are aligned as "dove-tail" by bowtie2? I've used the flag --dovetail while mapping with bowtie2. ...
... Thanks dariober for your response. I'm aware of Monocle and am currently using it. But what I wanted to know is that can the standard RNA-seq tools be used for single-cell RNA-seq?Are there no specific requirements for single-cell rna-seq in terms of normalization etc, given that single-cell has th ...
... Hi all, I've a single-cell rna-seq data and need identify DE genes across different cell groups. I would like to know can we use edgeR of DESeq for DE analysis of single-cells? If yes, then do we use the cells of the same group as replicates? Thanks in advance! ...
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