User: Masood

gravatar for Masood
Masood20
Reputation:
20
Status:
New User
Location:
United Kingdom
Last seen:
1 day, 1 hour ago
Joined:
6 years, 3 months ago
Email:
m*********@gmail.com

Posts by Masood

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Mutect output for CNV calling
... Basically you are looking for regions of LOH and allelic imbalance using the snp information. The different values in the extra columns of cn1 and cn2 means these are regions of LOH or allelic imbalance. So there will be three types of strcutural variants: copy number gain loh, copy number loss loh ...
written 6 months ago by Masood20
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Comment: C: Mutect output for CNV calling
... Yes, the unfiltered ones. Cnvkit will filter variants with somatic tag in mutect2 calls. ...
written 6 months ago by Masood20
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Comment: C: Mutect output for CNV calling
... You need MuTect output to call the region of LOH. Further information is in this post https://www.biostars.org/p/254848/ ...
written 6 months ago by Masood20
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Comment: C: How to perform correlation between unmatched miRNA and mRNA data?
... Thanks Gian for your reply. You are right that we can only calculate correlation on matching data but in my case data is like following: miRNA = 4 NormalSamples - 6 TumorSamples mRNA_Gene = 4 NormalSamples - 5 TumorSamples I want to calculate the inverse effect of miRNA on mRNA gene. I have als ...
written 4.7 years ago by Masood20 • updated 8 months ago by RamRS28k
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How to perform correlation between unmatched miRNA and mRNA data?
... How can we perform correlation analysis between  unmatched microRNA and mRNA expression data?    Thanks in advance.  ...
mrna correlation integration mirna written 4.7 years ago by Masood20
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Comment: C: Distant metastases-free survival Time and Events/Censored data
... NO! I am not. ...
written 5.2 years ago by Masood20
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Distant metastases-free survival Time and Events/Censored data
... I am trying to perform Kaplan-Meier analysis using histopathological information on its own and using the expression values. I am taking "mets-dd-after-diagnosis" as Time and "Alive/Death" as Events.    Could you please help in suggesting that I am taking the Event variable rightly? or please sugg ...
cox regression survival analysis prognosis written 5.2 years ago by Masood20 • updated 5.2 years ago by Sean Davis26k

Latest awards to Masood

Voter 19 months ago, voted more than 100 times.
Popular Question 24 months ago, created a question with more than 1,000 views. For How to perform correlation between unmatched miRNA and mRNA data?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For How to perform correlation between unmatched miRNA and mRNA data?
Supporter 5.2 years ago, voted at least 25 times.

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