User: theodore

gravatar for theodore
theodore20
Reputation:
20
Status:
New User
Location:
Germany
Last seen:
2 days, 4 hours ago
Joined:
3 years, 5 months ago
Email:
t*********************@gmail.com

Posts by theodore

<prev • 22 results • page 1 of 3 • next >
0
votes
4
answers
205
views
4
answers
Comment: C: False output when intersecting methylation data
... Hi Alex, Thank you for your time. As far as I can see it works well. ...
written 16 days ago by theodore20
0
votes
4
answers
205
views
4
answers
Comment: C: False output when intersecting methylation data
... How can I compensate for the empty areas? ...
written 27 days ago by theodore20
0
votes
4
answers
205
views
4
answers
Comment: C: False output when intersecting methylation data
... Hey Alex, Now I found that I get some small problems like: The script does not calculate for empty genomic locations as 0 or NA data and when it merges the fifht column it swifts the values so that they will fill the space. head -n 20 /media/trotos/4TB/hESC/Encode_chip_files/methylation/whatTOd ...
written 27 days ago by theodore20
0
votes
4
answers
205
views
4
answers
Comment: C: False output when intersecting methylation data
... I am currently installing the git version. Will let you know if everything works as promised ;) Thank you for your time. ...
written 27 days ago by theodore20
0
votes
4
answers
205
views
4
answers
Answer: A: False output when intersecting methylation data
... I will wait patiently. Thank you for your efforts. ...
written 27 days ago by theodore20
0
votes
4
answers
205
views
4
answers
Comment: C: False output when intersecting methylation data
... Ok, I followed your advice and although the binning is correct I found that the data is somehow scrambled. so, the first lines of the original files are: (NOTE THAT I FOLLOW THE SAME PATTERN FOR THE FILE'S ORDER E016-E004-E013) trotos@StupidMint:~$ head /media/trotos/4TB/hESC/Encode_chip_files/ ...
written 27 days ago by theodore20
0
votes
4
answers
205
views
4
answers
Comment: C: False output when intersecting methylation data
... Thank you Alex for the answer. Since I am not familiar with the bedops suit could you please elaborate on the need for performing 3 steps and latter an additional awk? I checked briefly the functions and it is not intuitive hat this would be the best way to get the results. ...
written 28 days ago by theodore20
0
votes
4
answers
205
views
4
answers
False output when intersecting methylation data
... Dear all, I came across the following situation: I have three WGBS methylation data from the epigenomics roadmap: > E016_WGBS_FractionalMethylation_allCHROM.bedgraph > E013_WGBS_FractionalMethylation_allCHROM.bedgraph > E004_WGBS_FractionalMethylation_allCHROM.bedgraph The values of methy ...
multiintersect intersect wgbs written 29 days ago by theodore20 • updated 26 days ago by Alex Reynolds21k
0
votes
1
answer
221
views
1
answers
Comment: C: oligoMatch from ucsc
... that's the worst omission, ever made! thank you and sorry for my stupidity! ...
written 6 months ago by theodore20
1
vote
1
answer
221
views
1
answer
oligoMatch from ucsc
... Hallo people, one quick question, how does oligoMatch from ucsc (kent lab tools) works? I am asking because for some reason it does not work for me. I am downloading the oligomatch from ucsc exe folder (the 64bit version), I download the hg19 genome in fasta (i have also tried the 2bit) **hg19.fa** ...
oligomatch ucsc written 6 months ago by theodore20 • updated 6 months ago by Emily_Ensembl13k

Latest awards to theodore


Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 780 users visited in the last hour