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questions
0
votes
2
replies
280
views
polygenic risk scores calculation
polygenic-risk-score
12 weeks ago by
Eliza
▴ 30
2
votes
3
replies
641
views
SKAT vs SIMES methods
pvalue
gynotype
SKAT
simes
R
updated 12 months ago by
LChart
3.9k • written 12 months ago by
Eliza
▴ 30
4
votes
2
replies
853
views
SKAT TEST
pvalue
SKAT
SNP
R
VCF
updated 12 months ago by
Jeremy Leipzig
22k • written 12 months ago by
Eliza
▴ 30
1
vote
4
replies
1.2k
views
SKAT in R
pvalue
skat
snp
12 months ago by
Eliza
▴ 30
0
votes
0
replies
586
views
Simes method
simes
method
SNP
R
13 months ago by
Eliza
▴ 30
1
vote
7
replies
1.1k
views
Dependent p values
pvalue
snp
Gene
12 months ago by
Eliza
▴ 30
0
votes
2
replies
601
views
SNP annotation with ANNOVAR
SIFT
SNP
annovar
14 months ago by
Eliza
▴ 30
0
votes
6
replies
1.2k
views
SNPs annotation using SnpEff
SNPEff
snp
annotation
VCF.
15 months ago by
Eliza
▴ 30
2
votes
5
replies
937
views
Ensembl data
ensembl
vcf
snp
updated 15 months ago by
Ben_Ensembl
★ 2.4k • written 15 months ago by
Eliza
▴ 30
1
vote
5
replies
1.7k
views
convert tsv file to VCF
CADD
vcf
updated 15 months ago by
barslmn
★ 2.1k • written 15 months ago by
Eliza
▴ 30
0
votes
5
replies
979
views
uploding VCF file to CADD and Ensemb
CADD
vcf
Ensembl
SNP
updated 15 months ago by
Ben_Ensembl
★ 2.4k • written 15 months ago by
Eliza
▴ 30
0
votes
3
replies
812
views
extracting information from gnomad
vcf
info
snp
gnomad
updated 15 months ago by
barslmn
★ 2.1k • written 15 months ago by
Eliza
▴ 30
2
votes
3
replies
1.0k
views
CAAD score for SNPs vcf file
wget
SNP
CAAD
VCF
updated 15 months ago by
barslmn
★ 2.1k • written 15 months ago by
Eliza
▴ 30
2
votes
4
replies
1.0k
views
Availability of information on genes in Gnomad VCF data
genom
exome
vcf
genome
gnomad
16 months ago by
Eliza
▴ 30
0
votes
4
replies
600
views
error in reading vcf file
vcf
gnomad
updated 16 months ago by
Ram
43k • written 16 months ago by
Eliza
▴ 30
1
vote
6
replies
1.0k
views
AF=NA in gnomad vcf
gnomad
VCF
updated 16 months ago by
Ram
43k • written 16 months ago by
Eliza
▴ 30
4
votes
7
replies
1.0k
views
exome and genome data
exome
vcf
genome
gene
gnomad
updated 16 months ago by
Ram
43k • written 16 months ago by
Eliza
▴ 30
1
vote
1
reply
364
views
exome VS genom vcf file in gnomad - solved
vcf
genome
exome
genomad
16 months ago by
Eliza
▴ 30
2
votes
4
replies
616
views
sending a job in ubunti on gnomad vcf file -solved
ubuntu
vcf
gnomad
R
16 months ago by
Eliza
▴ 30
3
votes
7
replies
983
views
runing R script on VCF dile in ubuntu
ubuntu
vcf
gnomad
R
16 months ago by
Eliza
▴ 30
2
votes
2
replies
710
views
download gnomad data using wget in linux
vcf
unix
ubuntu
linux
gnomad
updated 16 months ago by
Ram
43k • written 17 months ago by
Eliza
▴ 30
0
votes
4
replies
698
views
gnomad data for chrx
vcf
freq
gnomad
af
updated 16 months ago by
Ram
43k • written 17 months ago by
Eliza
▴ 30
2
votes
1
reply
514
views
Gnomad vcf data info column
gnomad
Vcf
updated 16 months ago by
Ram
43k • written 17 months ago by
Eliza
▴ 30
0
votes
0
replies
355
views
gnomad data - Allele freq for latino population
frequency
AF
vcf
allele
gnomad
17 months ago by
Eliza
▴ 30
0
votes
8
replies
1.6k
views
Opening a VCF.bgz file in python
vcf
gnomad
bgz
updated 17 months ago by
M.O.L.S
▴ 100 • written 17 months ago by
Eliza
▴ 30
0
votes
0
replies
328
views
Cochran–Armitage test results
test
SNP
Armitage
VCF
18 months ago by
Eliza
▴ 30
0
votes
4
replies
722
views
preforming armitage test on chunks of data in R of VCF file
R
SNP
Armitage
VCF
18 months ago by
Eliza
▴ 30
2
votes
8
replies
1.1k
views
genotype encoding
gynotype
homozygous
snp
hetrozygous
18 months ago by
Eliza
▴ 30
0
votes
1
reply
440
views
testing association between snp and the label disease
cochran
test
SNP
Armitage
updated 18 months ago by
iraun
6.2k • written 18 months ago by
Eliza
▴ 30
2
votes
7
replies
1.2k
views
Cochran–Armitage test
test
SNP
Armitage
VCF
18 months ago by
Eliza
▴ 30
3
votes
2
replies
640
views
AF column in VCF file
VCF
AF
heterozygous
12 months ago by
Eliza
▴ 30
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