User: Kamila001

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Kamila001120
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Posts by Kamila001

<prev • 18 results • page 1 of 2 • next >
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Structure Predction And Biochemical Properties Of Amino Acids
... Hi everyone, I am interested in knowing if there is any known commandline tools for 3-D structure prediction along with considering biochemical properties of amino acids? Can you please suggest some literature or scripts for this? If yes to command line tools, then which is the most widely used? A ...
prediction protein structural written 7.5 years ago by Kamila001120 • updated 7.5 years ago by User 200570
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Comment: C: Single Position Highlight In Multiple Sequence Alignment
... True… its homologous sequences i guess ...
written 7.7 years ago by Kamila001120
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Comment: C: Single Position Highlight In Multiple Sequence Alignment
... true … its homologous sequences i guess? ...
written 7.7 years ago by Kamila001120
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Comment: C: Single Position Highlight In Multiple Sequence Alignment
... Thank you Dan for the suggestion, I still did not get this. I have downloaded annotation file for one of my alignments but cannot understand how will i give the position/column to be highlighted for specific sequence. Please could you explain in little detail? ...
written 7.7 years ago by Kamila001120
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Single Position Highlight In Multiple Sequence Alignment
... Hi All, I have multiple sequence alignments of homologous species of more than 1000 proteins in .aln format. For each protein, i have an interested amino acid position for dogs.I am interested in highlighting that position in the alignment. One obvious way is to use Jalview using tool like MUSCLE a ...
multiple written 7.7 years ago by Kamila001120 • updated 2.5 years ago by Biostar ♦♦ 20
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Comment: C: Building Protein Models From Tblastn Tabular Format
... you are right :), so let me explain, blast hits give the nucleotide hits,I want to retrieve those hits for each query protein and then further translate the sequence to protein. Does it answer your quenstion? ...
written 8.2 years ago by Kamila001120
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Building Protein Models From Tblastn Tabular Format
... Hi, I have done tblastn and now I have a blast tabular output format for proteins. Each hit has this information queryId, subjectId, percIdentity, alnLength, mismatchCount, gapOpenCount, queryStart, queryEnd, subjectStart, subjectEnd, eVal, bitScore what i am interested in is that for each ...
protein blast parsing written 8.2 years ago by Kamila001120 • updated 8.2 years ago by Lars Juhl Jensen11k
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Comment: C: Analysis Of Putative Causitive Mutations
... Thank you very much Pauline for such a detailed answer. I am working on the Genome wide analysis and will surely look at the Ka/Ks and gene family using Biomart. If I am not wrong this means may be by using Ka/ks we are also trying to figure if any candidate gene is psuedogene or not? or this will t ...
written 8.5 years ago by Kamila001120
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Analysis Of Putative Causitive Mutations
... I have set of predicted causitive missense mutations by using Insilico tools like SIFT, SNAP, SNPEffect, Polyphen etc.. The question is What would be the best way to further analyze them (bioinformatics tools or statistical methods or grafically)? e.g. could do the gene ontology analysis to see thei ...
function statistics written 8.5 years ago by Kamila001120 • updated 8.5 years ago by Khader Shameer18k
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Comment: C: Snps In Noncoding Region Of Genome
... thanks Larry, if its not out of the scope of this question, could you please specify the steps/options/literature you followed to retrieve these matrixes. That would be really helpful. ...
written 8.7 years ago by Kamila001120

Latest awards to Kamila001

Appreciated 8.7 years ago, created a post with more than 5 votes. For Snps In Noncoding Region Of Genome
Popular Question 8.7 years ago, created a question with more than 1,000 views. For Snps In Noncoding Region Of Genome
Student 8.7 years ago, asked a question with at least 3 up-votes. For Snps In Noncoding Region Of Genome
Popular Question 8.7 years ago, created a question with more than 1,000 views. For Missense Mutations Predictions Using Sift And Polyphen-2
Student 8.7 years ago, asked a question with at least 3 up-votes. For Missense Mutations Predictions Using Sift And Polyphen-2

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