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1
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3.0k
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Comment: C: minimap2: aligning multiple regions to a read in a fastq
3.8 years ago by Rob 6.5k
3
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1
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2.1k
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Answer: A: Transcript level counts from full length scRNA data
3.8 years ago by Rob 6.5k
0
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1
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4.2k
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Comment: C: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
3.9 years ago by Rob 6.5k
2
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1
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4.2k
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Answer: A: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
3.9 years ago by Rob 6.5k
3
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0
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3.5k
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Answer: A: Question related to time complexity of Needleman-Wunsch Algorithm
3.9 years ago by Rob 6.5k
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0
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1.1k
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Comment: C: Tool for computing all solutions to the small parsimony problem
3.9 years ago by Rob 6.5k
2
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0
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2.0k
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Comment: C: having trouble running Salmon in anaconda prompt
4.0 years ago by Rob 6.5k
0
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0
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2.0k
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Comment: C: having trouble running Salmon in anaconda prompt
4.0 years ago by Rob 6.5k
1
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1
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2.2k
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Comment: C: hisat2 salmon alignment error
4.1 years ago by Rob 6.5k
1
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1
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2.2k
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Answer: A: hisat2 salmon alignment error
4.1 years ago by Rob 6.5k
0
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0
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976
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Comment: C: parameters mapping in salmon software
4.1 years ago by Rob 6.5k
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0
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976
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Comment: C: parameters mapping in salmon software
4.1 years ago by Rob 6.5k
1
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2
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1.6k
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Comment: C: can salmon distinguish similar transcript?
4.1 years ago by Rob 6.5k
5
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3
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1.6k
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Answer: C: can salmon distinguish similar transcript?
4.1 years ago by Rob 6.5k
5
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1
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3.8k
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Answer: A: warning when creating salmon index from GENCODE transcriptome
4.1 years ago by Rob 6.5k
2
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1
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1.3k
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Answer: C: Salmon only processes human reads from PDX data
4.2 years ago by Rob 6.5k
2
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2
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4.7k
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Comment: C: Sailfish TPM normalization: does it take into account the size the library?
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
1
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1
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2.9k
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Comment: C: Can k-tuple(k-mer/k-word) methods apply to reads generated from next-generation
updated 4.3 years ago by 43k • written 9.9 years ago by 6.5k
2
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0
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5.8k
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Comment: C: confusion in the DeBruijn Graph
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
1
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1
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5.8k
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Comment: C: confusion in the DeBruijn Graph
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
6
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2
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45k
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Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
3
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0
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6.9k
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Answer: A: K-mers using JEllyfish
updated 4.3 years ago by 43k • written 9.9 years ago by 6.5k
2
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0
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5.4k
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Comment: C: align shortreads using R
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
1
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0
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5.8k
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Comment: C: confusion in the DeBruijn Graph
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
5
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1
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4.7k
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Answer: A: Sailfish TPM normalization: does it take into account the size the library?
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
1
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0
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5.8k
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Comment: C: confusion in the DeBruijn Graph
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
4
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4
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5.8k
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Answer: A: confusion in the DeBruijn Graph
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
0
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1
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7.0k
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Comment: C: TPM or FPKM as input values for PCA and WGCNA?
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
3
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1
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4.5k
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Comment: C: best workflow for RNA data analysis without replications
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
2
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0
replies
7.0k
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Answer: A: TPM or FPKM as input values for PCA and WGCNA?
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
0
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1
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2.5k
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Answer: A: Why is cuffdiff only returning insignificant differences?
updated 4.3 years ago by 43k • written 10.0 years ago by 6.5k
2
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1
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2.6k
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Answer: A: Can pairwise global alignment be done in linear memory with affine gap penalties
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
7
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2
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56k
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Answer: A: Calculating TPM from featureCounts output
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
0
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1
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1.2k
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Comment: C: Issue with index creation in RapMap
4.3 years ago by Rob 6.5k
0
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0
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3.5k
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Comment: C: Microarray and RNA-seq different result
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
0
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1
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21k
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Comment: C: Current state-of-the-art for RNA-Seq gene / transcript expression quantification
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
0
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0
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3.1k
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Comment: C: finding reads from fastq files corresponds to particular transcript from fasta f
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
1
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0
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2.8k
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Answer: A: what's the best kmer size for sailfish
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
0
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0
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4.1k
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Comment: C: Salmon warning detected suspicious pair
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
0
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1
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4.1k
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Comment: C: Salmon warning detected suspicious pair
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
0
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0
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18k
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Comment: C: Is There Any Other Method For Isoform-Level Differential Expression Analysis Exc
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
5
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1
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3.1k
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Answer: A: How to handle Reverse complement in De-Bruijn Graph
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
0
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0
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8.4k
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Comment: Comment: Salmon: A fast and versatile new tool for RNA-seq quantification
updated 2.1 years ago by 43k • written 8.5 years ago by 6.5k
0
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0
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4.0k
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Comment: C: Salmon error message
4.5 years ago by Rob 6.5k
6
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9
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5.6k
views
Keeping paired reads together when sorting BAM file by name
alignment next-gen RNA-Seq
updated 2.0 years ago by 43k • written 9.2 years ago by 6.5k
0
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0
replies
17k
views
Comment: C: Fragment Size: TLEN vs. isize
updated 4.5 years ago by 43k • written 9.8 years ago by 6.5k
17
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1
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31k
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Answer: C: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
updated 4.6 years ago by 141k • written 4.6 years ago by 6.5k
3
votes
0
replies
708
views
News: Testing and feedback of upcoming salmon release
salmon RNA-Seq
updated 10 months ago by 43k • written 4.6 years ago by 6.5k
0
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0
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5.4k
views
Comment: C: Python Program to read .fasta file to .txt file
4.6 years ago by Rob 6.5k
2
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1
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3.1k
views
Comment: C: Merging the output of salmon for RNA-seq counting with paired-end and single-end
4.7 years ago by Rob 6.5k
343 results • Page 3 of 7
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