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14
votes
1
reply
11k
views
Answer: A: How does salmon deal with decoy?
4.7 years ago by Rob 7.1k
3
votes
1
reply
2.0k
views
Answer: A: How to get different isoform's counts in different cell by using alevin (salmon
4.8 years ago by Rob 7.1k
2
votes
0
replies
1.2k
views
Answer: A: Trimmomatic and Salmon error
4.8 years ago by Rob 7.1k
3
votes
1
reply
3.1k
views
Answer: A: Transcript level counts from full length scRNA data
4.9 years ago by Rob 7.1k
2
votes
1
reply
5.5k
views
Answer: A: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
5.0 years ago by Rob 7.1k
3
votes
0
replies
4.2k
views
Answer: A: Question related to time complexity of Needleman-Wunsch Algorithm
5.0 years ago by Rob 7.1k
1
vote
1
reply
2.7k
views
Answer: A: hisat2 salmon alignment error
5.1 years ago by Rob 7.1k
5
votes
3
replies
2.3k
views
Answer: C: can salmon distinguish similar transcript?
5.2 years ago by Rob 7.1k
5
votes
1
reply
4.8k
views
Answer: A: warning when creating salmon index from GENCODE transcriptome
5.2 years ago by Rob 7.1k
2
votes
1
reply
1.6k
views
Answer: C: Salmon only processes human reads from PDX data
5.3 years ago by Rob 7.1k
6
votes
2
replies
49k
views
Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 5.3 years ago by 45k • written 9.3 years ago by 7.1k
3
votes
0
replies
7.8k
views
Answer: A: K-mers using JEllyfish
updated 5.3 years ago by 45k • written 10.9 years ago by 7.1k
5
votes
1
reply
5.6k
views
Answer: A: Sailfish TPM normalization: does it take into account the size the library?
updated 5.3 years ago by 45k • written 9.3 years ago by 7.1k
4
votes
4
replies
7.4k
views
Answer: A: confusion in the DeBruijn Graph
updated 5.3 years ago by 45k • written 9.3 years ago by 7.1k
2
votes
0
replies
8.3k
views
Answer: A: TPM or FPKM as input values for PCA and WGCNA?
updated 5.4 years ago by 45k • written 9.3 years ago by 7.1k
0
votes
1
reply
2.9k
views
Answer: A: Why is cuffdiff only returning insignificant differences?
updated 5.4 years ago by 45k • written 11.1 years ago by 7.1k
2
votes
1
reply
2.9k
views
Answer: A: Can pairwise global alignment be done in linear memory with affine gap penalties
updated 5.4 years ago by 45k • written 9.3 years ago by 7.1k
7
votes
2
replies
65k
views
Answer: A: Calculating TPM from featureCounts output
updated 5.4 years ago by 45k • written 9.4 years ago by 7.1k
1
vote
0
replies
3.0k
views
Answer: A: what's the best kmer size for sailfish
updated 5.4 years ago by 45k • written 9.5 years ago by 7.1k
5
votes
1
reply
3.4k
views
Answer: A: How to handle Reverse complement in De-Bruijn Graph
updated 5.5 years ago by 45k • written 9.6 years ago by 7.1k
18
votes
1
reply
39k
views
Answer: C: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
updated 5.6 years ago by 151k • written 5.6 years ago by 7.1k
2
votes
0
replies
1.5k
views
Answer: A: Does salmon use phred scores while pseudoaligning (and/or validating mapping)?
6.0 years ago by Rob 7.1k
1
vote
1
reply
2.4k
views
Answer: C: do paired end reads both mapped to the same gene appear consecutive to each othe
6.1 years ago by Rob 7.1k
6
votes
0
replies
5.9k
views
Answer: C: Salmon (quant.sf) to txtimport
6.1 years ago by Rob 7.1k
3
votes
1
reply
7.0k
views
Answer: C: Understanding salmon codes
6.2 years ago by Rob 7.1k
7
votes
3
replies
8.6k
views
Answer: A: Salmon transcriptome generation
6.2 years ago by Rob 7.1k
5
votes
2
replies
5.2k
views
Answer: A: Salmon Counts differ in Alignment and Quasi-Mapping mode
6.2 years ago by Rob 7.1k
3
votes
0
replies
3.4k
views
Answer: C: RNA-Seq:How to know RNA-seq data is Strand-Specific or not based on only fastq
updated 6.3 years ago by 88k • written 6.3 years ago by 7.1k
5
votes
2
replies
8.2k
views
Answer: A: How to change cellranger multimapping algorithm
6.4 years ago by Rob 7.1k
4
votes
2
replies
3.0k
views
Answer: A: Average Insert Size When Using Transcript Quantification Tools Such as Salmon?
6.6 years ago by Rob 7.1k
0
votes
1
reply
5.4k
views
Answer: A: Salmon (error: SAM file and fasta file have different transcript length)
6.6 years ago by Rob 7.1k
6
votes
0
replies
4.1k
views
Answer: A: RNA-seq: differentially expressed genes without genome reference
updated 6.6 years ago by 45k • written 9.2 years ago by 7.1k
4
votes
1
reply
1.9k
views
Answer: A: Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archi
6.7 years ago by Rob 7.1k
4
votes
1
reply
5.0k
views
Answer: A: Salmon Quantification for RNA-seq Read Pairs with Different Lengths
6.7 years ago by Rob 7.1k
6
votes
1
reply
4.9k
views
Answer: A: Salmon quantification vs HTSeq count quantification
6.7 years ago by Rob 7.1k
3
votes
1
reply
1.7k
views
Answer: A: Salmon Algorithm Binary Search
6.7 years ago by Rob 7.1k
3
votes
1
reply
3.6k
views
Answer: A: Stranded RNA-seq data visualization in UCSC
6.8 years ago by Rob 7.1k
2
votes
1
reply
1.8k
views
Answer: A: Conflict of abundances on different taxonomic levels using centrifuge
6.8 years ago by Rob 7.1k
0
votes
0
replies
1.3k
views
Answer: A: Bayesian algorithm / HISAT & STAR
6.8 years ago by Rob 7.1k
16
votes
1
reply
10k
views
Answer: C: Mapping vs Quasi-Mapping
6.8 years ago by Rob 7.1k
3
votes
1
reply
6.1k
views
Answer: A: Big differences between mappings computed by Salmon and quantification
6.8 years ago by Rob 7.1k
5
votes
1
reply
13k
views
Answer: A: CDS vs cDNA vs transcript for mapping RNA-Seq reads
7.0 years ago by Rob 7.1k
2
votes
2
replies
2.7k
views
Answer: A: Library type warning in Salmon
7.1 years ago by Rob 7.1k
4
votes
3
replies
4.1k
views
Answer: A: Number of threads in BWA
7.1 years ago by Rob 7.1k
0
votes
0
replies
2.2k
views
Answer: A: Regarding GC correction in sequencing data
7.4 years ago by Rob 7.1k
1
vote
1
reply
1.6k
views
Answer: A: Hierarchical mapping of RNA-Seq data
7.4 years ago by Rob 7.1k
4
votes
0
replies
4.1k
views
Answer: A: From transcripts counts of Salmon to genes counts needed by edgeR
7.5 years ago by Rob 7.1k
2
votes
1
reply
3.3k
views
Answer: A: How to calculate TPM of transcripts with isoforms
7.6 years ago by Rob 7.1k
7
votes
0
replies
3.4k
views
Answer: A: Convert a FASTA Amino Acid Sequence to RNA (Reverse Central Dogma)
7.6 years ago by Rob 7.1k
0
votes
0
replies
1.9k
views
Answer: A: Salmon TPMs not the same for each strand individually (--libType IU)?
7.7 years ago by Rob 7.1k
136 results • Page 2 of 3
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