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2
votes
1
reply
1.3k
views
Answer: C: Salmon only processes human reads from PDX data
4.2 years ago by Rob 6.5k
6
votes
2
replies
45k
views
Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
3
votes
0
replies
6.9k
views
Answer: A: K-mers using JEllyfish
updated 4.3 years ago by 43k • written 9.9 years ago by 6.5k
5
votes
1
reply
4.7k
views
Answer: A: Sailfish TPM normalization: does it take into account the size the library?
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
4
votes
4
replies
5.8k
views
Answer: A: confusion in the DeBruijn Graph
updated 4.3 years ago by 43k • written 8.2 years ago by 6.5k
2
votes
0
replies
7.0k
views
Answer: A: TPM or FPKM as input values for PCA and WGCNA?
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
0
votes
1
reply
2.5k
views
Answer: A: Why is cuffdiff only returning insignificant differences?
updated 4.3 years ago by 43k • written 10.0 years ago by 6.5k
2
votes
1
reply
2.6k
views
Answer: A: Can pairwise global alignment be done in linear memory with affine gap penalties
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
7
votes
2
replies
56k
views
Answer: A: Calculating TPM from featureCounts output
updated 4.3 years ago by 43k • written 8.3 years ago by 6.5k
1
vote
0
replies
2.8k
views
Answer: A: what's the best kmer size for sailfish
updated 4.4 years ago by 43k • written 8.4 years ago by 6.5k
5
votes
1
reply
3.1k
views
Answer: A: How to handle Reverse complement in De-Bruijn Graph
updated 4.4 years ago by 43k • written 8.5 years ago by 6.5k
17
votes
1
reply
31k
views
Answer: C: Could you explain the difference between STAR, KALLISTO, SALMON etc. to experime
updated 4.6 years ago by 141k • written 4.6 years ago by 6.5k
2
votes
0
replies
1.3k
views
Answer: A: Does salmon use phred scores while pseudoaligning (and/or validating mapping)?
5.0 years ago by Rob 6.5k
1
vote
1
reply
1.9k
views
Answer: C: do paired end reads both mapped to the same gene appear consecutive to each othe
5.0 years ago by Rob 6.5k
6
votes
0
replies
5.0k
views
Answer: C: Salmon (quant.sf) to txtimport
5.1 years ago by Rob 6.5k
3
votes
1
reply
5.7k
views
Answer: C: Understanding salmon codes
5.1 years ago by Rob 6.5k
5
votes
3
replies
7.4k
views
Answer: A: Salmon transcriptome generation
5.1 years ago by Rob 6.5k
5
votes
2
replies
4.4k
views
Answer: A: Salmon Counts differ in Alignment and Quasi-Mapping mode
5.2 years ago by Rob 6.5k
3
votes
0
replies
2.9k
views
Answer: C: RNA-Seq:How to know RNA-seq data is Strand-Specific or not based on only fastq
updated 5.3 years ago by 81k • written 5.3 years ago by 6.5k
5
votes
2
replies
6.6k
views
Answer: A: How to change cellranger multimapping algorithm
5.3 years ago by Rob 6.5k
4
votes
2
replies
2.4k
views
Answer: A: Average Insert Size When Using Transcript Quantification Tools Such as Salmon?
5.5 years ago by Rob 6.5k
0
votes
1
reply
4.3k
views
Answer: A: Salmon (error: SAM file and fasta file have different transcript length)
5.5 years ago by Rob 6.5k
6
votes
0
replies
3.7k
views
Answer: A: RNA-seq: differentially expressed genes without genome reference
updated 5.6 years ago by 43k • written 8.2 years ago by 6.5k
4
votes
1
reply
1.6k
views
Answer: A: Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archi
5.6 years ago by Rob 6.5k
4
votes
1
reply
4.2k
views
Answer: A: Salmon Quantification for RNA-seq Read Pairs with Different Lengths
5.6 years ago by Rob 6.5k
5
votes
1
reply
4.2k
views
Answer: A: Salmon quantification vs HTSeq count quantification
5.6 years ago by Rob 6.5k
3
votes
1
reply
1.2k
views
Answer: A: Salmon Algorithm Binary Search
5.7 years ago by Rob 6.5k
3
votes
1
reply
3.0k
views
Answer: A: Stranded RNA-seq data visualization in UCSC
5.7 years ago by Rob 6.5k
2
votes
1
reply
1.5k
views
Answer: A: Conflict of abundances on different taxonomic levels using centrifuge
5.7 years ago by Rob 6.5k
0
votes
0
replies
1.0k
views
Answer: A: Bayesian algorithm / HISAT & STAR
5.7 years ago by Rob 6.5k
16
votes
1
reply
8.3k
views
Answer: C: Mapping vs Quasi-Mapping
5.7 years ago by Rob 6.5k
3
votes
1
reply
5.0k
views
Answer: A: Big differences between mappings computed by Salmon and quantification
5.8 years ago by Rob 6.5k
5
votes
0
replies
9.8k
views
Answer: A: CDS vs cDNA vs transcript for mapping RNA-Seq reads
6.0 years ago by Rob 6.5k
2
votes
2
replies
2.3k
views
Answer: A: Library type warning in Salmon
6.0 years ago by Rob 6.5k
4
votes
3
replies
3.4k
views
Answer: A: Number of threads in BWA
6.1 years ago by Rob 6.5k
0
votes
0
replies
1.9k
views
Answer: A: Regarding GC correction in sequencing data
6.3 years ago by Rob 6.5k
1
vote
1
reply
1.3k
views
Answer: A: Hierarchical mapping of RNA-Seq data
6.4 years ago by Rob 6.5k
3
votes
0
replies
3.7k
views
Answer: A: From transcripts counts of Salmon to genes counts needed by edgeR
6.5 years ago by Rob 6.5k
2
votes
1
reply
2.9k
views
Answer: A: How to calculate TPM of transcripts with isoforms
6.5 years ago by Rob 6.5k
7
votes
0
replies
3.0k
views
Answer: A: Convert a FASTA Amino Acid Sequence to RNA (Reverse Central Dogma)
6.6 years ago by Rob 6.5k
0
votes
0
replies
1.7k
views
Answer: A: Salmon TPMs not the same for each strand individually (--libType IU)?
6.6 years ago by Rob 6.5k
3
votes
1
reply
5.7k
views
Answer: A: TPM VS FPKM VS TMM and K-mer specific expression quantification
6.7 years ago by Rob 6.5k
1
vote
0
replies
10k
views
Answer: A: Mapping onto the Transcriptome, RNA-seq
6.8 years ago by Rob 6.5k
1
vote
2
replies
4.2k
views
Answer: A: Reference for Salmon
6.8 years ago by Rob 6.5k
4
votes
0
replies
3.5k
views
Answer: A: Salmon libType is required but missing, although I thought I supplied it
6.8 years ago by Rob 6.5k
2
votes
0
replies
2.6k
views
Answer: A: Getting this message in SALMON's log file:""Greater than 5% of the fragments dis
6.8 years ago by Rob 6.5k
2
votes
0
replies
2.6k
views
Answer: A: salmon, kallisto psuedoaligners are failing to process
6.9 years ago by Rob 6.5k
1
vote
1
reply
1.9k
views
Answer: A: combine or split, that's a question for transcriptome assembly
6.9 years ago by Rob 6.5k
11
votes
0
replies
8.4k
views
Answer: A: Effective length in normalisation for reads counts
6.9 years ago by Rob 6.5k
1
vote
1
reply
3.0k
views
Answer: A: Looking for advice on making a grad school decision on bioinformatics/computatio
7.1 years ago by Rob 6.5k
127 results • Page 2 of 3
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