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1
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12k
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Answer: A: Mapping onto the Transcriptome, RNA-seq
7.5 years ago by Rob 7.0k
1
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2
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4.6k
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Answer: A: Reference for Salmon
7.6 years ago by Rob 7.0k
4
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0
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3.9k
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Answer: A: Salmon libType is required but missing, although I thought I supplied it
7.6 years ago by Rob 7.0k
2
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0
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2.8k
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Answer: A: Getting this message in SALMON's log file:""Greater than 5% of the fragments dis
7.6 years ago by Rob 7.0k
2
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0
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2.7k
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Answer: A: salmon, kallisto psuedoaligners are failing to process
7.6 years ago by Rob 7.0k
1
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1
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2.2k
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Answer: A: combine or split, that's a question for transcriptome assembly
7.7 years ago by Rob 7.0k
11
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0
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9.0k
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Answer: A: Effective length in normalisation for reads counts
7.7 years ago by Rob 7.0k
1
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1
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3.4k
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Answer: A: Looking for advice on making a grad school decision on bioinformatics/computatio
7.8 years ago by Rob 7.0k
2
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1
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2.3k
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Answer: A: More specifics on Jellyfish -C methodology.
7.8 years ago by Rob 7.0k
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1
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4.2k
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Answer: A: How is the FM-index built for multiple entries of a fasta file?
7.8 years ago by Rob 7.0k
3
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1
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4.9k
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Answer: A: Correct for GC content bias RNASeq DE
7.9 years ago by Rob 7.0k
8
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1
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6.0k
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Answer: C: Main difference between RSEM and k-mer based quantification methods
7.9 years ago by Rob 7.0k
5
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0
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2.9k
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Answer: A: Differences between Counts and FPKMS
7.9 years ago by Rob 7.0k
2
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2
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2.3k
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Answer: A: Shortest Missing K-mer
8.0 years ago by Rob 7.0k
3
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1
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1.5k
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Answer: A: Error in the generative model of RNA-Seq?
8.1 years ago by Rob 7.0k
5
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0
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7.6k
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Answer: A: Salmon libtype - Does it matter?
8.4 years ago by Rob 7.0k
2
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0
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3.5k
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Answer: A: Can FM Index be built in linear time?
8.5 years ago by Rob 7.0k
5
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2
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6.0k
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Answer: A: Does TPM account for fragments?
8.5 years ago by Rob 7.0k
2
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2
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9.9k
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Answer: A: Optimal k-mer size for RNA-seq data alignment using reference genome for indexin
8.5 years ago by Rob 7.0k
6
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0
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2.4k
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Answer: A: Why samtools sort input file is 4.3 Gb but output become 3.5Gb....
8.7 years ago by Rob 7.0k
3
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1
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3.1k
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Answer: A: Getting sequence id from k-mers using jellyfish
8.8 years ago by Rob 7.0k
2
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2
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2.8k
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Answer: A: Error in Transcript to gene level estimation using "Genesum" package
8.8 years ago by Rob 7.0k
2
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1
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2.1k
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Answer: C: How to quantify noise level of estimated isoform expression levels from RNA-seq
8.9 years ago by Rob 7.0k
0
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0
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6.0k
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Answer: A: Poor correlation of read count values from STAR and Kallisto
8.9 years ago by Rob 7.0k
1
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0
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11k
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Answer: Answer: Network Comparison by comparing two different adjacency matrices
updated 2.4 years ago by 44k • written 9.3 years ago by 7.0k
3
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1
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10k
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Answer: Answer: Can Kallisto be followed by DESeq, EdgeR or Cuffdiff?
updated 2.3 years ago by 44k • written 9.4 years ago by 7.0k
8
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4
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9.5k
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Answer: Answer: Jellyfish -C option explanation
updated 2.3 years ago by 44k • written 9.5 years ago by 7.0k
4
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0
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3.3k
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Answer: Answer: Hash Table Vs Suffix Array Alignment Error Tolerance
updated 2.2 years ago by 44k • written 9.5 years ago by 7.0k
3
votes
1
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3.6k
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Answer: Answer: Estimating RPKM or TPM in RNA-Seq data
updated 2.1 years ago by 44k • written 9.6 years ago by 7.0k
2
votes
1
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5.2k
views
Answer: Answer: Must paired-end reads be in the same order in the two files for input to Tophat?
updated 2.8 years ago by 44k • written 10.0 years ago by 7.0k
7
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1
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13k
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Answer: Answer: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 2.8 years ago by 44k • written 10.0 years ago by 7.0k
3
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1
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11k
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Answer: Answer: How Scores are given in Substitution matrix like PAM and BLOSUM?
updated 3.0 years ago by 44k • written 10.3 years ago by 7.0k
1
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0
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4.6k
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Answer: Answer: Confused about gap penalty for global alignment using dynamic programming?
updated 3.0 years ago by 44k • written 10.3 years ago by 7.0k
5
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2
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5.6k
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Answer: Answer: Fast kmer reverse complement code using bit tricks
updated 3.1 years ago by 44k • written 10.3 years ago by 7.0k
0
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0
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2.9k
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Answer: Answer: Effect of changing scoring functions on Optimal alignment ?
updated 3.1 years ago by 44k • written 10.4 years ago by 7.0k
135 results • Page 3 of 3
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