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2
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1
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4.7k
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Comment: C: RNA-Seq for DE analysis
8.0 years ago by Rob 6.5k
1
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1
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2.5k
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Comment: C: Error in Transcript to gene level estimation using "Genesum" package
8.1 years ago by Rob 6.5k
1
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0
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21k
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Comment: C: Current state-of-the-art for RNA-Seq gene / transcript expression quantification
8.1 years ago by Rob 6.5k
0
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0
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3.5k
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Comment: C: RNA-seq mapper that allows variability and handles multi-mapping?
8.1 years ago by Rob 6.5k
1
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0
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3.5k
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Comment: C: RNA-seq mapper that allows variability and handles multi-mapping?
8.1 years ago by Rob 6.5k
0
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0
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2.8k
views
Comment: C: Getting sequence id from k-mers using jellyfish
8.1 years ago by Rob 6.5k
0
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0
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4.7k
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Comment: C: Merging more than 2 csv files in r studio?
8.1 years ago by Rob 6.5k
0
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0
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7.5k
views
Comment: C: HISAT2 end-to-end and --no-spliced-alignment mode returns gapped alignments
8.2 years ago by Rob 6.5k
8
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1
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2.3k
views
Comment: C: C++ tools are hard to install for biologist, why the community stick on it?
8.2 years ago by Rob 6.5k
2
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0
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7.5k
views
Comment: C: HISAT2 end-to-end and --no-spliced-alignment mode returns gapped alignments
8.2 years ago by Rob 6.5k
0
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2
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5.4k
views
Comment: Comment: Correlation of read count values from STAR and Kallisto
updated 21 months ago by 43k • written 8.2 years ago by 6.5k
2
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1
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5.4k
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Comment: Comment: Correlation of read count values from STAR and Kallisto
updated 21 months ago by 43k • written 8.2 years ago by 6.5k
1
vote
1
reply
5.4k
views
Comment: Comment: Correlation of read count values from STAR and Kallisto
updated 21 months ago by 43k • written 8.2 years ago by 6.5k
0
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0
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4.4k
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Comment: Comment: Finding isoform expression in RNA-Seq
updated 2.0 years ago by 43k • written 8.5 years ago by 6.5k
0
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1
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4.4k
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Comment: Comment: Finding isoform expression in RNA-Seq
updated 2.0 years ago by 43k • written 8.5 years ago by 6.5k
1
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1
reply
6.8k
views
Comment: Comment: Bowtie2 or RSEM (with Bowtie2) alignment of PE reads with reference transcriptom
updated 19 months ago by 43k • written 8.6 years ago by 6.5k
0
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1
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8.4k
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Comment: Comment: Salmon: A fast and versatile new tool for RNA-seq quantification
updated 2.1 years ago by 43k • written 8.6 years ago by 6.5k
0
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0
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8.6k
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Comment: C: Jellyfish -C option explanation
8.7 years ago by Rob 6.5k
0
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1
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8.6k
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Comment: Comment: Jellyfish -C option explanation
updated 18 months ago by 43k • written 8.7 years ago by 6.5k
0
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1
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3.4k
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Comment: Comment: GATB de Bruijn graph
updated 18 months ago by 43k • written 8.7 years ago by 6.5k
0
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1
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3.4k
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Comment: Comment: GATB de Bruijn graph
updated 18 months ago by 43k • written 8.8 years ago by 6.5k
0
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1
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3.4k
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Comment: Comment: GATB de Bruijn graph
updated 18 months ago by 43k • written 8.8 years ago by 6.5k
0
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2
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3.4k
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Comment: Comment: GATB de Bruijn graph
updated 18 months ago by 43k • written 8.8 years ago by 6.5k
1
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1
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9.0k
views
Comment: Comment: Using rna-seq, why map reads to the genome but calculate gene expression by alig
updated 16 months ago by 43k • written 8.8 years ago by 6.5k
0
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0
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9.0k
views
Comment: Comment: Using rna-seq, why map reads to the genome but calculate gene expression by alig
updated 16 months ago by 43k • written 8.8 years ago by 6.5k
1
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0
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36k
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Comment: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
8.8 years ago by Rob 6.5k
1
vote
1
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36k
views
Comment: Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
updated 16 months ago by 43k • written 8.8 years ago by 6.5k
1
vote
2
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36k
views
Comment: Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
updated 16 months ago by 43k • written 8.8 years ago by 6.5k
0
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0
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3.7k
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Comment: Comment: Salmon Kallisto HtSeq-count for gene level analysis - Anecdotal evidence
updated 16 months ago by 43k • written 8.9 years ago by 6.5k
0
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1
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3.7k
views
Comment: Comment: Salmon Kallisto HtSeq-count for gene level analysis - Anecdotal evidence
updated 15 months ago by 43k • written 8.9 years ago by 6.5k
0
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1
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3.7k
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Comment: Comment: Salmon Kallisto HtSeq-count for gene level analysis - Anecdotal evidence
updated 15 months ago by 43k • written 8.9 years ago by 6.5k
0
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2
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3.7k
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Comment: Comment: Salmon Kallisto HtSeq-count for gene level analysis - Anecdotal evidence
updated 15 months ago by 43k • written 8.9 years ago by 6.5k
1
vote
1
reply
36k
views
Comment: Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
updated 15 months ago by 43k • written 8.9 years ago by 6.5k
0
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0
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2.7k
views
Comment: Comment: In search of "good" alternative splicing datasets for benchmarking purposes...
updated 24 months ago by 43k • written 9.2 years ago by 6.5k
0
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2
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5.6k
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Comment: Comment: Keeping paired reads together when sorting BAM file by name
updated 2.0 years ago by 43k • written 9.2 years ago by 6.5k
0
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0
replies
6.2k
views
Comment: Comment: Pandora's Toolbox - a collection of bioinformatics programs
updated 2.1 years ago by 43k • written 9.3 years ago by 6.5k
0
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1
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6.2k
views
Comment: Comment: Pandora's Toolbox - a collection of bioinformatics programs
updated 2.1 years ago by 43k • written 9.3 years ago by 6.5k
1
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1
reply
3.5k
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Comment: Comment: Best HMM library for bioinformatics
updated 2.1 years ago by 43k • written 9.4 years ago by 6.5k
0
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0
replies
3.9k
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Comment: Comment: Perplexing Bowtie 2 results
updated 2.2 years ago by 43k • written 9.4 years ago by 6.5k
0
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1
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3.9k
views
Comment: Comment: Perplexing Bowtie 2 results
updated 2.2 years ago by 43k • written 9.4 years ago by 6.5k
0
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1
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3.9k
views
Comment: Comment: Perplexing Bowtie 2 results
updated 2.2 years ago by 43k • written 9.4 years ago by 6.5k
0
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3
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3.9k
views
Comment: Comment: Perplexing Bowtie 2 results
updated 2.2 years ago by 43k • written 9.4 years ago by 6.5k
1
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2
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3.3k
views
Comment: Comment: "Valid" names for paired-end reads
updated 2.2 years ago by 43k • written 9.4 years ago by 6.5k
0
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0
replies
17k
views
Comment: Comment: Long read alignment
updated 3.1 years ago by 43k • written 9.5 years ago by 6.5k
0
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1
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2.5k
views
Comment: Comment: "Un-Projecting" genome alignments onto a transcriptome
updated 2.3 years ago by 43k • written 9.5 years ago by 6.5k
0
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1
reply
2.5k
views
Comment: Comment: "Un-Projecting" genome alignments onto a transcriptome
updated 2.3 years ago by 43k • written 9.5 years ago by 6.5k
0
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1
reply
2.5k
views
Comment: Comment: "Un-Projecting" genome alignments onto a transcriptome
updated 2.3 years ago by 43k • written 9.6 years ago by 6.5k
0
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0
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17k
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Comment: C: Fragment Size: TLEN vs. isize
9.8 years ago by Rob 6.5k
0
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0
replies
5.7k
views
Comment: C: Very Large Fpkm Values For Some Transcripts: Artifacts?
10.4 years ago by Rob 6.5k
0
votes
1
reply
2.4k
views
Comment: C: Use Rlsim With Empirical (Input) Expression Levels
10.4 years ago by Rob 6.5k
204 results • Page 4 of 5
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