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Comment: Comment: How do I load a peak file in ChIPseeker?
3 months ago by e.r.zakiev ▴ 230
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4.6k
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Comment: Comment: associate GO ID with GO description
6 months ago by e.r.zakiev ▴ 230
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Comment: Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
8 months ago by e.r.zakiev ▴ 230
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Comment: Comment: Parametric or non-parametric tests for qPCR significance testing between treatme
8 months ago by e.r.zakiev ▴ 230
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
8 months ago by e.r.zakiev ▴ 230
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1.6k
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Comment: Comment: Classifying repeat features from Ensembl
9 months ago by e.r.zakiev ▴ 230
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8.1k
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Comment: Comment: Repeat masked gtf files from ensembl
9 months ago by e.r.zakiev ▴ 230
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8.1k
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Comment: Comment: Repeat masked gtf files from ensembl
9 months ago by e.r.zakiev ▴ 230
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8.1k
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Comment: Comment: Repeat masked gtf files from ensembl
9 months ago by e.r.zakiev ▴ 230
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1.6k
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Comment: Comment: Classifying repeat features from Ensembl
9 months ago by e.r.zakiev ▴ 230
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8.1k
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Comment: Comment: Repeat masked gtf files from ensembl
9 months ago by e.r.zakiev ▴ 230
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1.1k
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
9 months ago by e.r.zakiev ▴ 230
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1.1k
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
updated 9 months ago by 44k • written 9 months ago by ▴ 230
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952
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Comment: Comment: Applicability of the SoupX ambient mRNA decontamination technique to fixed and/o
9 months ago by e.r.zakiev ▴ 230
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1.8k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
9 months ago by e.r.zakiev ▴ 230
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1.8k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
9 months ago by e.r.zakiev ▴ 230
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2.7k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
11 months ago by e.r.zakiev ▴ 230
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2.7k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
11 months ago by e.r.zakiev ▴ 230
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2.7k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
11 months ago by e.r.zakiev ▴ 230
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2.7k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
11 months ago by e.r.zakiev ▴ 230
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5.8k
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Comment: Comment: How long it takes to run repeat masker on a full genome
12 months ago by e.r.zakiev ▴ 230
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5.8k
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Comment: Comment: How long it takes to run repeat masker on a full genome
12 months ago by e.r.zakiev ▴ 230
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944
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Comment: Comment: Single-cell RNA-seq: Preprocessing: Clustering space and evaluation
12 months ago by e.r.zakiev ▴ 230
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Comment: Comment: best way to visualize bam file
12 months ago by e.r.zakiev ▴ 230
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1.0k
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Comment: Comment: from fasta to gtf format?
12 months ago by e.r.zakiev ▴ 230
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23k
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Comment: Comment: how do I run repeat masker
12 months ago by e.r.zakiev ▴ 230
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1
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8.1k
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Comment: Comment: Repeat masked gtf files from ensembl
12 months ago by e.r.zakiev ▴ 230
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2.0k
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Comment: Comment: How to get the gft file to run velocyto for velocity analysis?
12 months ago by e.r.zakiev ▴ 230
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1.4k
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Comment: Comment: Why runing scDblFinder before and after removing low QC cells gives different re
13 months ago by e.r.zakiev ▴ 230
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2.7k
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Comment: Comment: Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
13 months ago by e.r.zakiev ▴ 230
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695
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Comment: Comment: Which embedding for clustering of cells in single-cell RNAseq?
15 months ago by e.r.zakiev ▴ 230
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3.9k
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Comment: Comment: Clustering in single cell
15 months ago by e.r.zakiev ▴ 230
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3.9k
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Comment: Comment: Clustering in single cell
15 months ago by e.r.zakiev ▴ 230
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3.9k
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Comment: Comment: Clustering in single cell
15 months ago by e.r.zakiev ▴ 230
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3.9k
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Comment: Comment: Clustering in single cell
15 months ago by e.r.zakiev ▴ 230
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2.6k
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Comment: Comment: Clustering resolution single-cell RNA-seq
15 months ago by e.r.zakiev ▴ 230
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3.6k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
15 months ago by e.r.zakiev ▴ 230
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1.8k
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Comment: Comment: Good alignment rate for DNA-seq data
15 months ago by e.r.zakiev ▴ 230
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3.6k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
15 months ago by e.r.zakiev ▴ 230
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3.6k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
15 months ago by e.r.zakiev ▴ 230
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1.4k
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Comment: Comment: How to decide what gene set libraries to use in your GSEA analysis
15 months ago by e.r.zakiev ▴ 230
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3.6k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
15 months ago by e.r.zakiev ▴ 230
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850
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Comment: Comment: Cloud Computing w.r.t. AWS, Google Cloud, Microsoft Azure
15 months ago by e.r.zakiev ▴ 230
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1.6k
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Comment: Comment: remove batch effect
15 months ago by e.r.zakiev ▴ 230
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1.6k
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Comment: Comment: Why is chromHMM's binarizeBed with the -peaks argument not recommended for broad
16 months ago by e.r.zakiev ▴ 230
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1.7k
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Comment: Comment: Extract RPKM values from Diffbind
16 months ago by e.r.zakiev ▴ 230
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1.0k
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Comment: Comment: barcodes not show up in overrepresented sequences in FASTQC
18 months ago by e.r.zakiev ▴ 230
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1.0k
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Comment: Comment: barcodes not show up in overrepresented sequences in FASTQC
18 months ago by e.r.zakiev ▴ 230
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594
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Comment: Comment: Panther db Reference List
19 months ago by e.r.zakiev ▴ 230
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39k
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Comment: Comment: ATAC-seq peak calling with MACS
21 months ago by e.r.zakiev ▴ 230
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