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Comment: Comment: LogFC on geometric means vs on arithmetic means. Presto vs Seurat
4 months ago by e.r.zakiev ▴ 260
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Comment: Comment: How do I change the title font size in ViolinPlot (Seurat)
5 months ago by e.r.zakiev ▴ 260
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Comment: Comment: Cytoscape Tetramer Error Without Hints
7 months ago by e.r.zakiev ▴ 260
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Comment: Comment: ChromHMM - annotation of chromatin states
9 months ago by e.r.zakiev ▴ 260
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Comment: Comment: ChromHMM - annotation of chromatin states
9 months ago by e.r.zakiev ▴ 260
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2.0k
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Comment: Comment: ChromHMM - annotation of chromatin states
9 months ago by e.r.zakiev ▴ 260
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6.9k
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Comment: Comment: How do I load a peak file in ChIPseeker?
13 months ago by e.r.zakiev ▴ 260
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6.1k
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Comment: Comment: associate GO ID with GO description
16 months ago by e.r.zakiev ▴ 260
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6.5k
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Comment: Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
18 months ago by e.r.zakiev ▴ 260
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2.7k
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Comment: Comment: Parametric or non-parametric tests for qPCR significance testing between treatme
18 months ago by e.r.zakiev ▴ 260
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
18 months ago by e.r.zakiev ▴ 260
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2.4k
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Comment: Comment: Classifying repeat features from Ensembl
19 months ago by e.r.zakiev ▴ 260
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11k
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Comment: Comment: Repeat masked gtf files from ensembl
19 months ago by e.r.zakiev ▴ 260
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11k
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Comment: Comment: Repeat masked gtf files from ensembl
19 months ago by e.r.zakiev ▴ 260
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11k
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Comment: Comment: Repeat masked gtf files from ensembl
19 months ago by e.r.zakiev ▴ 260
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2.4k
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Comment: Comment: Classifying repeat features from Ensembl
19 months ago by e.r.zakiev ▴ 260
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11k
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Comment: Comment: Repeat masked gtf files from ensembl
19 months ago by e.r.zakiev ▴ 260
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2.1k
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
19 months ago by e.r.zakiev ▴ 260
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2.1k
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
updated 19 months ago by 45k • written 19 months ago by ▴ 260
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1.5k
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Comment: Comment: Applicability of the SoupX ambient mRNA decontamination technique to fixed and/o
20 months ago by e.r.zakiev ▴ 260
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2.5k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
20 months ago by e.r.zakiev ▴ 260
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
20 months ago by e.r.zakiev ▴ 260
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
21 months ago by e.r.zakiev ▴ 260
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4.8k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
21 months ago by e.r.zakiev ▴ 260
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4.8k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
21 months ago by e.r.zakiev ▴ 260
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4.8k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
21 months ago by e.r.zakiev ▴ 260
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6.9k
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Comment: Comment: How long it takes to run repeat masker on a full genome
22 months ago by e.r.zakiev ▴ 260
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6.9k
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Comment: Comment: How long it takes to run repeat masker on a full genome
22 months ago by e.r.zakiev ▴ 260
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2.6k
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Comment: Comment: Single-cell RNA-seq: Preprocessing: Clustering space and evaluation
22 months ago by e.r.zakiev ▴ 260
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13k
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Comment: Comment: best way to visualize bam file
22 months ago by e.r.zakiev ▴ 260
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Comment: Comment: from fasta to gtf format?
22 months ago by e.r.zakiev ▴ 260
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27k
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Comment: Comment: how do I run repeat masker
22 months ago by e.r.zakiev ▴ 260
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1
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11k
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Comment: Comment: Repeat masked gtf files from ensembl
22 months ago by e.r.zakiev ▴ 260
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4.1k
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Comment: Comment: How to get the gft file to run velocyto for velocity analysis?
22 months ago by e.r.zakiev ▴ 260
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2.4k
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Comment: Comment: Why runing scDblFinder before and after removing low QC cells gives different re
23 months ago by e.r.zakiev ▴ 260
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Comment: Comment: Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
24 months ago by e.r.zakiev ▴ 260
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1.5k
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Comment: Comment: Which embedding for clustering of cells in single-cell RNAseq?
2.1 years ago by e.r.zakiev ▴ 260
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6.6k
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Comment: Comment: Clustering in single cell
2.1 years ago by e.r.zakiev ▴ 260
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6.6k
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Comment: Comment: Clustering in single cell
2.1 years ago by e.r.zakiev ▴ 260
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6.6k
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Comment: Comment: Clustering in single cell
2.1 years ago by e.r.zakiev ▴ 260
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6.6k
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Comment: Comment: Clustering in single cell
2.1 years ago by e.r.zakiev ▴ 260
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3.2k
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Comment: Comment: Clustering resolution single-cell RNA-seq
2.1 years ago by e.r.zakiev ▴ 260
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7.1k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
2.1 years ago by e.r.zakiev ▴ 260
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3.1k
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Comment: Comment: Good alignment rate for DNA-seq data
2.1 years ago by e.r.zakiev ▴ 260
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7.1k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
2.1 years ago by e.r.zakiev ▴ 260
1
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7.1k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
2.1 years ago by e.r.zakiev ▴ 260
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3.4k
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Comment: Comment: How to decide what gene set libraries to use in your GSEA analysis
2.1 years ago by e.r.zakiev ▴ 260
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7.1k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
2.1 years ago by e.r.zakiev ▴ 260
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1.4k
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Comment: Comment: Cloud Computing w.r.t. AWS, Google Cloud, Microsoft Azure
2.1 years ago by e.r.zakiev ▴ 260
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2.9k
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Comment: Comment: remove batch effect
2.1 years ago by e.r.zakiev ▴ 260
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