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Comment: Comment: Classifying repeat features from Ensembl
9 days ago by e.r.zakiev ▴ 200
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Comment: Comment: Repeat masked gtf files from ensembl
13 days ago by e.r.zakiev ▴ 200
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6.4k
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Comment: Comment: Repeat masked gtf files from ensembl
14 days ago by e.r.zakiev ▴ 200
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6.4k
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Comment: Comment: Repeat masked gtf files from ensembl
19 days ago by e.r.zakiev ▴ 200
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Comment: Comment: Classifying repeat features from Ensembl
19 days ago by e.r.zakiev ▴ 200
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6.4k
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Comment: Comment: Repeat masked gtf files from ensembl
19 days ago by e.r.zakiev ▴ 200
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407
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
21 days ago by e.r.zakiev ▴ 200
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407
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
updated 22 days ago by 43k • written 22 days ago by ▴ 200
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587
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Comment: Comment: Applicability of the SoupX ambient mRNA decontamination technique to fixed and/o
5 weeks ago by e.r.zakiev ▴ 200
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1.4k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
5 weeks ago by e.r.zakiev ▴ 200
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
5 weeks ago by e.r.zakiev ▴ 200
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1.5k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
11 weeks ago by e.r.zakiev ▴ 200
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1.5k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
12 weeks ago by e.r.zakiev ▴ 200
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1.5k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
12 weeks ago by e.r.zakiev ▴ 200
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1.5k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
12 weeks ago by e.r.zakiev ▴ 200
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5.2k
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Comment: Comment: How long it takes to run repeat masker on a full genome
3 months ago by e.r.zakiev ▴ 200
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5.2k
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Comment: Comment: How long it takes to run repeat masker on a full genome
3 months ago by e.r.zakiev ▴ 200
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399
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Comment: Comment: Single-cell RNA-seq: Preprocessing: Clustering space and evaluation
3 months ago by e.r.zakiev ▴ 200
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9.8k
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Comment: Comment: best way to visualize bam file
3 months ago by e.r.zakiev ▴ 200
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861
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Comment: Comment: from fasta to gtf format?
3 months ago by e.r.zakiev ▴ 200
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21k
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Comment: Comment: how do I run repeat masker
3 months ago by e.r.zakiev ▴ 200
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6.4k
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Comment: Comment: Repeat masked gtf files from ensembl
3 months ago by e.r.zakiev ▴ 200
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1.1k
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Comment: Comment: How to get the gft file to run velocyto for velocity analysis?
3 months ago by e.r.zakiev ▴ 200
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879
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Comment: Comment: Why runing scDblFinder before and after removing low QC cells gives different re
4 months ago by e.r.zakiev ▴ 200
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Comment: Comment: Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
5 months ago by e.r.zakiev ▴ 200
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Comment: Comment: Which embedding for clustering of cells in single-cell RNAseq?
6 months ago by e.r.zakiev ▴ 200
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2.2k
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Comment: Comment: Clustering in single cell
6 months ago by e.r.zakiev ▴ 200
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2.2k
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Comment: Comment: Clustering in single cell
6 months ago by e.r.zakiev ▴ 200
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Comment: Comment: Clustering in single cell
6 months ago by e.r.zakiev ▴ 200
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2.2k
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Comment: Comment: Clustering in single cell
6 months ago by e.r.zakiev ▴ 200
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Comment: Comment: Clustering resolution single-cell RNA-seq
6 months ago by e.r.zakiev ▴ 200
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
6 months ago by e.r.zakiev ▴ 200
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Comment: Comment: Good alignment rate for DNA-seq data
6 months ago by e.r.zakiev ▴ 200
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1.5k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
6 months ago by e.r.zakiev ▴ 200
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1.5k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
6 months ago by e.r.zakiev ▴ 200
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598
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Comment: Comment: How to decide what gene set libraries to use in your GSEA analysis
6 months ago by e.r.zakiev ▴ 200
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1.5k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
6 months ago by e.r.zakiev ▴ 200
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1
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578
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Comment: Comment: Cloud Computing w.r.t. AWS, Google Cloud, Microsoft Azure
6 months ago by e.r.zakiev ▴ 200
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1.2k
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Comment: Comment: remove batch effect
6 months ago by e.r.zakiev ▴ 200
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Comment: Comment: Why is chromHMM's binarizeBed with the -peaks argument not recommended for broad
7 months ago by e.r.zakiev ▴ 200
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1.4k
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Comment: Comment: Extract RPKM values from Diffbind
8 months ago by e.r.zakiev ▴ 200
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1
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689
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Comment: Comment: barcodes not show up in overrepresented sequences in FASTQC
9 months ago by e.r.zakiev ▴ 200
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689
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Comment: Comment: barcodes not show up in overrepresented sequences in FASTQC
9 months ago by e.r.zakiev ▴ 200
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469
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Comment: Comment: Panther db Reference List
10 months ago by e.r.zakiev ▴ 200
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36k
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Comment: Comment: ATAC-seq peak calling with MACS
12 months ago by e.r.zakiev ▴ 200
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2.6k
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Comment: Comment: ClusterProfiler enrichKEGG – remove organism name in plots?
13 months ago by e.r.zakiev ▴ 200
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1.3k
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Comment: Comment: msigdbr returns the same genesets for mouse as in for human,
13 months ago by e.r.zakiev ▴ 200
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Comment: Comment: Sorting a STAR-output bam file with samtools leads to a significant reduction in
13 months ago by e.r.zakiev ▴ 200
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1.6k
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Comment: Comment: Sorting a STAR-output bam file with samtools leads to a significant reduction in
13 months ago by e.r.zakiev ▴ 200
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1.3k
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Comment: Comment: msigdbr returns the same genesets for mouse as in for human,
13 months ago by e.r.zakiev ▴ 200
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