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Issues with FPKM Calculation in RNA-seq Analysis (Apodemus agrarius)
FPKM. Cufflinks
updated 25 days ago by 15k • written 25 days ago by ▴ 40
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0
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199
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Issue with Taxonomy Assignment Using Kraken and Custom Database (BOLD, Nemabiome) in QIIME2 shotgun
BOLD Qiime2 Taxonomy Assignment Kraken2
6 weeks ago by ohtang7 ▴ 40
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0
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207
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For RNAseq GSA analysis with unique rodent species
GOenrichment RNAseq GSA hypergeometrictest Apodemus
3 months ago by ohtang7 ▴ 40
2
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4
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663
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Has anyone tried absence or presence heatmap ? (Or suggestion)
R absence Heatmap grouping
updated 3 months ago by ▴ 130 • written 3 months ago by ▴ 40
7
votes
5
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766
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STAR alignment for RNA seq - trouble occurred
Alignment STAR RNA-seq gtf
3 months ago by ohtang7 ▴ 40
1
vote
3
replies
975
views
Is there any way to modify this pie chart ?
pie ggplot R chart
updated 10 months ago by 150k • written 10 months ago by ▴ 40
0
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0
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278
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The concept of co-occurrence network structure
co-occurence microbiome network
11 months ago by ohtang7 ▴ 40
0
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1
reply
585
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Network Analysis of Microbiome Data: MicrobiomeAnalyst vs. Cytoscape
MicrobiomeAnalyst
13 months ago by ohtang7 ▴ 40
2
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4
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931
views
How Can I move the scattered dots more closer into the center of box ?
R Boxplots geom_jitter
15 months ago by ohtang7 ▴ 40
6
votes
3
replies
1.1k
views
How can I adjust Y-axis scale when making relative abundance box plot ?
statistics box-plot R scale_adjustment logarithm
updated 16 months ago by ▴ 930 • written 16 months ago by ▴ 40
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4
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1.1k
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Making multiple box plots with relative abundance in R
R Boxplots
16 months ago by ohtang7 ▴ 40
0
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1
reply
650
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chi-square test using vectors - and trying to for loop
R chi-square
updated 17 months ago by 45k • written 17 months ago by ▴ 40
0
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0
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478
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How can I obtain the significantly different taxa data from this Aldex plot ? (Using R)
taxa test Aldex2 of abundance Relative R
2.0 years ago by ohtang7 ▴ 40
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0
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615
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How to export the result contents (analyzed part only) of clr function to the CSV file ? (The microbiota data) in R Aldex2 package
Aldex2 ASV R
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 40
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2
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1.2k
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What's the reason and how to fix - Regression model summary - variable name is combined with a category character in R
interpretation Model GLM Regression Summary LM
2.0 years ago by ohtang7 ▴ 40
1
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3
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2.1k
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How can I change my default python version (from upper to lower) in Ubuntu OS using virtual machine ?
Qiime2 Linux Machine Virtual Python
updated 2.3 years ago by 150k • written 2.4 years ago by ▴ 40
8
votes
6
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3.2k
views
Using Generalized Linear Model in Microbial structure comparison
metabarcoding GLM microbiota GLMM
2.3 years ago by ohtang7 ▴ 40
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