User: Ananth

gravatar for Ananth
Ananth70
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70
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New User
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Last seen:
8 years, 3 months ago
Joined:
8 years, 3 months ago
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1***@biostars.org

Posts by Ananth

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Fetching Domain Summary Information From Pfam In Bulk
... Thank you very much. ...
written 8.3 years ago by Ananth70
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Fetching Domain Summary Information From Pfam In Bulk
... Hi, I'm interested in fetching the domain summary information from Pfam for a large number of protein families (around 3000). I am particularly looking for the organism related information present in the summary. For eg: DUF1013 is present in proteobacteria. http://pfam.sanger.ac.uk/family?acc=PF0 ...
domain written 8.3 years ago by Ananth70 • updated 8.3 years ago by Pierre Lindenbaum120k
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Comment: C: Similarity Score Of Multiple Sequence Alignment
... Thanks bilouweb ! It was helpful. :) ...
written 8.3 years ago by Ananth70
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Comment: C: Similarity Score Of Multiple Sequence Alignment
... Thank you Giovanni, As you correctly pointed out, yes for a specific substitution matrix in a global alignment is there a way to calculate this similarity score for a MSA ?! ...
written 8.3 years ago by Ananth70
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Comment: C: Similarity Score Of Multiple Sequence Alignment
... Thank you Alastair As for a pairwise sequence alignment ClustalW indicates the sequence identity by a score which shows the percentage identity shared between the 2 sequences. By the measure of similarity what I meant was, instead having a score that is for 2 sequences, can we have a score that give ...
written 8.3 years ago by Ananth70
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Similarity Score Of Multiple Sequence Alignment
... Hello, I have a file with protein sequences for which I would like to know the similarity score of the multiple sequence alignment. I have aligned these sequences using ClustalW, but all I get is the pairwise identity score ! I am not looking for the pairwise identity or similarity score, but th ...
multiple written 8.3 years ago by Ananth70 • updated 8.3 years ago by User 043150

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