User: zhwjmch

gravatar for zhwjmch
zhwjmch100
Reputation:
100
Status:
New User
Location:
United States
Last seen:
5 years, 3 months ago
Joined:
6 years, 6 months ago
Email:
z******@gmail.com

Posts by zhwjmch

<prev • 15 results • page 1 of 2 • next >
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Comment: C: Extract subset sequences from fasta file
... Sure, 2R or 2L, :) Thanks for recommend BBMap package.  ...
written 5.4 years ago by zhwjmch100
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Extract subset sequences from fasta file
... I would like to extract a subset of fasta files based on the following two criterions: 1) seq length, 2) loc=2R and loc=2L; both of the information are indicated in their ID lines. Thanks in advance :)     Example: two sequences are listed below, I would like to extract all length longer than 300 ...
sequence written 5.4 years ago by zhwjmch100 • updated 5.1 years ago by Matt Shirley9.4k
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(Closed) Closed I have found the solution , please close this
... Closed I have found the solution , please close this Closed I have found the solution , please close this ...
sequencing written 5.5 years ago by zhwjmch100
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Comment: A: fastq-dump --split-files separation biased?
... I am happy both posts are closed, the question is not that useful to others. So... ...
written 5.5 years ago by zhwjmch100
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Comment: C: fastq-dump --split-files separation biased?
... Thanks for your response. ...
written 5.5 years ago by zhwjmch100
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(Closed) Closed I have found the solution , please close this
... Thanks a lot.   Closed I have found the solution , please close this ...
next-gen written 5.5 years ago by zhwjmch100
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Heatmap for plink output
... Hello, I have output from plink ld analysis, the format is like: CHR_A         BP_A       SNP_A  CHR_B         BP_B       SNP_B           R2       1    224104510  rs10915886      1    224117126  rs10915888            1       1    224104510  rs10915886      1    224168791  rs12078868     0.858443  ...
R snp written 6.2 years ago by zhwjmch100
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How to extract unique mapped results from BWA results?
... How to extract unique mapped results from BWA results?  I am working with 454 data, and I chose BWA mem as the mapping tool. Thanks in advance. ...
alignment written 6.5 years ago by zhwjmch100 • updated 6.5 years ago by Paul1.4k
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Answer: C: Bowtie2 for 454 Data?
... > "It handles very long reads (i.e. upwards of 10s or 100s of kilobases), but it is optimized for the read lengths and error modes yielded by recent sequencers, such as the Illumina HiSeq 2000, Roche 454, and Ion Torrent instruments." cited from [Bowtie2 online manual](http://bowtie-bio.sourcef ...
written 6.5 years ago by zhwjmch100 • updated 13 months ago by _r_am30k
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Bowtie2 for 454 Data?
... The DNA data was produced by MWG-Biotech: 454 (GS FLX machine) sequencing by emulsion PCR. Is Bowtie2 a good choice for mapping those reads to the whole human genome? Any other suggestions? Thanks in advance. ...
alignment written 6.5 years ago by zhwjmch100 • updated 6.5 years ago by dariober11k

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Popular Question 5.8 years ago, created a question with more than 1,000 views. For How to extract unique mapped results from Bowtie2 bam results?

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