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3
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Comment: Comment: Modeling RNAseq batch effects using a non-case/control technical replicate
14 months ago by Chris Miller 22k
4
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8
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1.3k
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Modeling RNAseq batch effects using a non-case/control technical replicate
batch-correction batch-effect RNA-seq
updated 14 months ago by ★ 16k • written 14 months ago by 22k
0
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0
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697
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Answer: Answer: SciClone R package
15 months ago by Chris Miller 22k
0
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0
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693
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Comment: Comment: calling somatic variants w/o quality filters
15 months ago by Chris Miller 22k
1
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1
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835
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Answer: Answer: TCGA - Is vital_status subject to follow_up duration?
20 months ago by Chris Miller 22k
1
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0
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805
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Answer: Answer: Pindel - comparing tumour vs somatic sample
2.0 years ago by Chris Miller 22k
0
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0
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1.1k
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Comment: Comment: sciclone iteration does not converge
2.4 years ago by Chris Miller 22k
0
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1
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1.1k
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Answer: Answer: sciclone iteration does not converge
2.5 years ago by Chris Miller 22k
0
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0
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4.2k
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Comment: Comment: sciClone input vaf file?
2.5 years ago by Chris Miller 22k
10
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1
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15k
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Answer: A: Problem To Understand Copy-Number Values Per Gene Provided By The Broad Institut
updated 3.6 years ago by 43k • written 12.5 years ago by 22k
4
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1
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25k
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Comment: A: Extract Base Based On Position From Bam File
updated 3.7 years ago by 43k • written 11.8 years ago by 22k
0
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0
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1.2k
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Comment: C: Effects of applying BQSR twice?
3.8 years ago by Chris Miller 22k
1
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2
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1.2k
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Effects of applying BQSR twice?
bqsr alignment qualityscores sequencing
updated 3.8 years ago by 35k • written 3.8 years ago by 22k
0
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0
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1.8k
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Comment: C: How to distinguish subclone from sciClone or PyClone result
4.0 years ago by Chris Miller 22k
1
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0
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1.8k
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Answer: A: How to distinguish subclone from sciClone or PyClone result
4.0 years ago by Chris Miller 22k
1
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0
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1.1k
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Answer: A: Sciclone cluster all around y=x
4.0 years ago by Chris Miller 22k
0
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0
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2.8k
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Answer: Answer: I have a long list of GI and I want their accession number
updated 2.0 years ago by 43k • written 8.2 years ago by 22k
0
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0
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2.3k
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Comment: C: Is there any journal where you can post small programs to solve very specific ta
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
4
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0
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2.3k
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Answer: A: Is there any journal where you can post small programs to solve very specific ta
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
3
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1
reply
3.5k
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Comment: C: brew - yet another fastq utility
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
1
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1
reply
2.7k
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Answer: A: bedtools intersect: keep pairing consistent
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
2
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0
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1.2k
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Answer: A: Hot questions in sequencing data accessability
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
1
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0
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5.5k
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Comment: C: align shortreads using R
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
2
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1
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4.4k
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Comment: C: Why do people not call normal and tumor variant separately for somatic mutation
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
6
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1
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4.4k
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Answer: A: Why do people not call normal and tumor variant separately for somatic mutation
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
2
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1
reply
3.6k
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Answer: A: Why is my ADMIXTURE random seed always 43
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
3
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2
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3.9k
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Answer: A: Reference and dbSNP incompatibility issue (MuTect2)
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
0
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0
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3.2k
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Comment: C: Generating Read Length?
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
0
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2
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3.2k
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Comment: C: Generating Read Length?
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
0
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1
reply
3.2k
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Answer: A: Generating Read Length?
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
5
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1
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7.4k
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Answer: A: Change chromosome notation to match a new reference
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
17
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1
reply
45k
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Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
0
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0
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2.8k
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Comment: C: Mixed opinions on somatic variant calling method
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
2
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0
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3.2k
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Comment: C: How can a gene exist on three different chromosomes!?!?
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
3
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1
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2.8k
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Answer: A: Mixed opinions on somatic variant calling method
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
0
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1
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3.2k
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Answer: A: How can a gene exist on three different chromosomes!?!?
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
2
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1
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4.5k
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Answer: A: HiSeq vs GA for RNASeqV2 on TCGA
updated 4.3 years ago by 43k • written 8.2 years ago by 22k
0
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0
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59k
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Comment: C: What Are The Most Common Stupid Mistakes In Bioinformatics?
updated 4.3 years ago by 43k • written 9.9 years ago by 22k
2
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0
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3.7k
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Comment: C: Calling variants in blood tumor samples without matched normal samples
updated 4.3 years ago by 43k • written 8.3 years ago by 22k
3
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0
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3.7k
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Answer: A: Calling variants in blood tumor samples without matched normal samples
updated 4.3 years ago by 43k • written 8.3 years ago by 22k
0
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0
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4.4k
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Comment: C: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 4.3 years ago by 43k • written 10.0 years ago by 22k
0
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1
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4.4k
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Answer: A: How to make this kind of 3-D plotting for cancer subclones ? (picture attached)
updated 4.3 years ago by 43k • written 10.0 years ago by 22k
1
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1
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4.2k
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Answer: C: tbl2asn Permission denied on Mac
updated 4.3 years ago by 43k • written 10.0 years ago by 22k
2
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1
reply
2.5k
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Answer: A: Is it correct to merge TCGA mutation data from multiple centers
updated 4.3 years ago by 43k • written 8.3 years ago by 22k
0
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1
reply
3.4k
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Answer: A: Somatic allele frequency from TCGA in non-coding DNA
updated 4.3 years ago by 43k • written 8.3 years ago by 22k
0
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1
reply
2.4k
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Answer: A: Pathway enrichment for Copy Number Alterations (CNA)
updated 4.3 years ago by 43k • written 8.3 years ago by 22k
3
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0
replies
3.4k
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Answer: A: What is a repetitive region?
updated 4.3 years ago by 43k • written 10.0 years ago by 22k
2
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0
replies
3.0k
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Answer: A: Spliting a dataframe based in a chromosome
updated 4.3 years ago by 43k • written 10.0 years ago by 22k
0
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0
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13k
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Comment: C: CNV analysis tool on exome data for NGS
updated 4.3 years ago by 43k • written 10.0 years ago by 22k
0
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1
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1.6k
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Comment: C: SubcloneSeeker SNP import from flat file
updated 4.4 years ago by 43k • written 8.3 years ago by 22k
1,036 results • Page 1 of 21
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