Moderator: Chris Miller

gravatar for Chris Miller
Chris Miller20k
Reputation:
20,040
Status:
Trusted
Location:
Washington University in St. Louis, MO
Website:
http://chrismiller.sci...
Scholar ID:
Google Scholar Page
Last seen:
59 minutes ago
Joined:
8 years, 9 months ago
Email:
c***********@gmail.com

I work in the Division of Oncology and McDonnell Genome Institute at Washington University in St. Louis, where I develop and apply computational tools to give us insight into the origins and progression of cancer.

Posts by Chris Miller

<prev • 1,073 results • page 2 of 108 • next >
1
vote
3
answers
2.0k
views
3
answers
Comment: C: Google announces DeepVariant
... Mark isn't trying to hide that fact - consider your post the disclaimer! ...
written 9 weeks ago by Chris Miller20k
0
votes
2
answers
1.2k
views
2
answers
Comment: C: SciClone on WES data
... You can also just add the `cnCallsAreLog2=TRUE` param when running sciclone ...
written 9 weeks ago by Chris Miller20k
0
votes
1
answer
181
views
1
answers
Answer: A: Calling CNVs from WGS data
... It depends on the resolution that you need, but I've called CNVs (fairly large scale) from 1x coverage or less. If you need exact breakpoints, you'll probably need substantially more. ...
written 9 weeks ago by Chris Miller20k
0
votes
0
answers
143
views
0
answers
Comment: C: bam2cfg.pl not able to find statistics : Breakdancer
... My general advice would be to stop using breakdancer. A whole host of more faster, more reliable, and more robust algorithms now exists (manta, lumpy, etc, etc) ...
written 9 weeks ago by Chris Miller20k
0
votes
4
answers
432
views
4
answers
Comment: C: Code Golf - bisulfite conversion
... When I edited the post, I added a small example! ...
written 10 weeks ago by Chris Miller20k
0
votes
4
answers
432
views
4
answers
Comment: C: Code Golf - bisulfite conversion
... Updated this post with more details and example input/output. Sorry for the confusion! ...
written 10 weeks ago by Chris Miller20k
0
votes
4
answers
432
views
4
answers
Comment: C: Code Golf - bisulfite conversion
... This is correct, it's either C->T or G->A, but not both! ...
written 10 weeks ago by Chris Miller20k
27
votes
4
answers
432
views
12 follow
4
answers
Code Golf - bisulfite conversion
... Been a while since we had a code golf challenge (shortest script wins, but expect to receive upvotes for cleverness)! Simplifying slightly, bisulfite conversion means that Cs get converted to Ts, but some bases may be protected by methylgroups and thus remain unconverted. (This happens on the opp ...
codegolf bsseq forum bisulfite golf written 10 weeks ago by Chris Miller20k • updated 10 weeks ago by zx87546.1k
1
vote
1
answer
328
views
1
answers
Comment: C: Fishplot R package
... Hi, fishplot creator here. Jared's advice is sound - start there. If you have continued issues, feel free to follow up here or post an issue on the github page ...
written 12 weeks ago by Chris Miller20k
0
votes
0
answers
201
views
0
answers
Comment: C: bam-readcount core dump
... The most common reason for bam-readcount crashes/core dumps are a mismatch between reference fasta and bam file. Are you sure that none of of your reads goes past the end of the chromosome sizes defined in your fasta? ...
written 4 months ago by Chris Miller20k

Latest awards to Chris Miller

Commentator 19 hours ago, created a comment with at least 3 up-votes. For C: All Possible Substitutions In The Human Reference Genome
Scholar 23 days ago, created an answer that has been accepted. For A: Spliting a dataframe based in a chromosome
Scholar 27 days ago, created an answer that has been accepted. For A: Spliting a dataframe based in a chromosome
Good Answer 5 weeks ago, created an answer that was upvoted at least 5 times. For A: Any Experiences/Solutions For Problems With The Last R Update?
Student 6 weeks ago, asked a question with at least 3 up-votes. For Long-Term Hosting For Large Annotation Files?
Student 10 weeks ago, asked a question with at least 3 up-votes. For Importing A Large Number Of References From Text
Good Question 10 weeks ago, asked a question that was upvoted at least 5 times. For Importing A Large Number Of References From Text
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Music Smashing The Stack
Appreciated 10 weeks ago, created a post with more than 5 votes. For C: Should Biostar Be Switched Over To The Stackexchange Network?
Good Answer 11 weeks ago, created an answer that was upvoted at least 5 times. For A: Hardware Suitable For Generic Nextgen Sequencing Processing?
Scholar 3 months ago, created an answer that has been accepted. For A: Spliting a dataframe based in a chromosome
Appreciated 3 months ago, created a post with more than 5 votes. For C: Should Biostar Be Switched Over To The Stackexchange Network?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: Music Smashing The Stack
Scholar 4 months ago, created an answer that has been accepted. For A: Spliting a dataframe based in a chromosome
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Music Smashing The Stack
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: Music Smashing The Stack
Popular Question 7 months ago, created a question with more than 1,000 views. For Efficiently storing methylation data from BS-sequencing
Scholar 7 months ago, created an answer that has been accepted. For A: Spliting a dataframe based in a chromosome
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: All Possible Substitutions In The Human Reference Genome
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: Music Smashing The Stack
Appreciated 9 months ago, created a post with more than 5 votes. For C: Should Biostar Be Switched Over To The Stackexchange Network?
Good Answer 9 months ago, created an answer that was upvoted at least 5 times. For A: Should I Remove The Unmapped Reads From My Bam ?
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: Music Smashing The Stack
Oracle 12 months ago, created more than 1,000 posts (questions + answers + comments).

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2139 users visited in the last hour